Factsheet for Bra038606.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY48125	Canola	plastid	90.61	93.18
Bra035860.1-P	Field mustard	plastid	88.95	91.48
AT5G63090.3	Thale cress	plastid	92.82	90.32
Bra039072.1-P	Field mustard	plastid	50.28	69.47
Bra033019.1-P	Field mustard	plastid	50.28	68.94
Bra025294.1-P	Field mustard	plastid	49.72	68.18
VIT_17s0000g09010.t01	Wine grape	plastid	65.19	64.13
PGSC0003DMT400069646	Potato	plastid	59.12	61.14
KRH54338	Soybean	plastid	62.43	61.08
KRH03242	Soybean	nucleus, plastid	63.54	60.85
KRH63606	Soybean	plastid	60.77	60.44
PGSC0003DMT400046644	Potato	nucleus, plastid	63.54	60.21
KRH57118	Soybean	plastid	63.54	58.38
Solyc03g112430.1.1	Tomato	nucleus, plastid	62.43	57.65
Solyc06g071660.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	58.56	52.22
Bra026042.1-P	Field mustard	mitochondrion	41.99	46.63
Bra039733.1-P	Field mustard	nucleus, plastid	51.38	46.04
Bra014907.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	43.65	45.93
Bra026716.1-P	Field mustard	mitochondrion	40.33	44.51
Os01t0169400-01	Rice	plastid	58.56	42.23
TraesCS3B01G108500.1	Wheat	plastid	58.01	40.86
TraesCS3D01G093500.1	Wheat	plastid	58.01	40.86
Bra018335.1-P	Field mustard	mitochondrion	42.54	40.74
TraesCS3A01G093200.1	Wheat	plastid	57.46	40.47
Bra022780.1-P	Field mustard	mitochondrion, nucleus	41.99	40.43
Zm00001d039694_P001	Maize	plastid	58.01	40.23
Bra021612.1-P	Field mustard	nucleus	41.44	39.47
EES00235	Sorghum	plastid	58.01	39.18
HORVU3Hr1G016690.1	Barley	plastid	58.01	37.91
Bra000188.1-P	Field mustard	plastid	39.23	35.68
Bra016992.1-P	Field mustard	plastid	37.57	33.83
Bra031599.1-P	Field mustard	nucleus, plastid	38.67	33.82
Bra018675.1-P	Field mustard	plastid	37.57	33.01
Bra004572.1-P	Field mustard	cytosol, mitochondrion, nucleus	39.23	31.84
Bra035698.1-P	Field mustard	plastid	36.46	28.82
Bra011942.1-P	Field mustard	plastid	36.46	28.33
Bra000491.1-P	Field mustard	plastid	35.91	28.14
Bra018320.1-P	Field mustard	mitochondrion	34.81	26.69
Bra032153.1-P	Field mustard	mitochondrion, nucleus	45.3	26.62
Bra012112.1-P	Field mustard	nucleus, plastid	46.96	25.15
Bra037142.1-P	Field mustard	nucleus, plastid	44.2	20.3

Protein Annotations

EnsemblPlants:Bra038606.1	EnsemblPlants:Bra038606.1-P	EnsemblPlantsGene:Bra038606	InterPro:IPR004883	InterPro:LOB	ncoils:Coil
PANTHER:PTHR31301	PANTHER:PTHR31301:SF35	PFAM:PF03195	PFscan:PS50891	SEG:seg	UniParc:UPI000253F242
UniProt:M4FBZ0	MapMan:15.5.24	:	:	:	:

Description

AT5G63090 (E=1e-090) LOB | LOB (LATERAL ORGAN BOUNDARIES)

Coordinates

chrA06:-:14136819..14137364

Molecular Weight (calculated)

19911.6 Da

IEP (calculated)

8.214

GRAVY (calculated)

-0.442

Length

181 amino acids

Sequence
(BLAST)

001: MASSSSNTYN SPCAACKFLR RKCMPGCIFA PYFPPEEPHK FANVHKIFGA SNVTKLLNEL LPHQREDAVN SLAYEAEARV RDPVYGCVGA ISYLQRQVHR
101: LQKELDAANA DLVHYGMSTS TPGNVVDLVF QPQPFPPQPL NPVYRLSGSS PVMTQQPRGT GGSYGTFLPW NNGHDQQGGN M

Best Arabidopsis Sequence Match ( AT5G63090.1 )
(BLAST)

001: MASSSNSYNS PCAACKFLRR KCMPGCIFAP YFPPEEPHKF ANVHKIFGAS NVTKLLNELL PHQREDAVNS LAYEAEARVR DPVYGCVGAI SYLQRQVHRL
101: QKELDAANAD LAHYGLSTSA AGAPGNVVDL VFQPQPLPSQ QLPPLNPVYR LSGASPVMNQ MPRGTGGSYG TFLPWNNGHD QQGGNM

Arabidopsis Description

LOBLOB [Source:UniProtKB/TrEMBL;Acc:A0A178UKE6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.