Factsheet for Bra021612.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT2G30130.1	Thale cress	mitochondrion, nucleus	95.79	94.3
Bra018335.1-P	Field mustard	mitochondrion	93.68	94.18
Bra022780.1-P	Field mustard	mitochondrion, nucleus	89.47	90.43
VIT_06s0004g07200.t01	Wine grape	mitochondrion, nucleus	68.95	80.37
Solyc06g082310.2.1	Tomato	mitochondrion, nucleus, plastid	68.42	74.71
PGSC0003DMT400078256	Potato	mitochondrion, nucleus, plastid	67.89	74.57
KRH73255	Soybean	mitochondrion, nucleus, plastid	59.47	73.38
KRH14912	Soybean	nucleus	58.95	73.2
KRG98217	Soybean	mitochondrion	65.26	72.09
KRH30173	Soybean	mitochondrion, nucleus	65.26	72.09
GSMUA_Achr5P29470_001	Banana	mitochondrion, nucleus	52.63	69.93
VIT_13s0067g01880.t01	Wine grape	mitochondrion	61.05	67.84
KRG97685	Soybean	mitochondrion, nucleus	56.84	65.45
Solyc06g050950.2.1	Tomato	mitochondrion, nucleus, plastid	58.42	64.91
PGSC0003DMT400061511	Potato	mitochondrion	58.42	64.91
TraesCS1A01G222300.1	Wheat	mitochondrion	62.11	62.43
TraesCS1B01G235700.1	Wheat	mitochondrion	62.11	62.43
TraesCS1D01G224000.1	Wheat	mitochondrion	62.11	62.43
Zm00001d038013_P001	Maize	mitochondrion	58.95	57.44
Os05t0346800-00	Rice	cytosol, nucleus	60.53	55.56
Bra025294.1-P	Field mustard	plastid	36.84	53.03
EES19343	Sorghum	mitochondrion	60.53	53.0
Bra033019.1-P	Field mustard	plastid	35.79	51.52
Bra026716.1-P	Field mustard	mitochondrion	44.21	51.22
HORVU1Hr1G060290.2	Barley	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	62.11	50.64
Bra014907.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	45.79	50.58
Bra026042.1-P	Field mustard	mitochondrion	42.63	49.69
Bra039072.1-P	Field mustard	plastid	34.21	49.62
Bra038606.1-P	Field mustard	plastid	39.47	41.44
Bra035860.1-P	Field mustard	plastid	36.84	39.77
Bra000188.1-P	Field mustard	plastid	40.53	38.69
Bra018675.1-P	Field mustard	plastid	41.58	38.35
Bra016992.1-P	Field mustard	plastid	40.0	37.81
Bra031599.1-P	Field mustard	nucleus, plastid	40.0	36.72
Bra039733.1-P	Field mustard	nucleus, plastid	38.42	36.14
Bra004572.1-P	Field mustard	cytosol, mitochondrion, nucleus	40.53	34.53
Bra035698.1-P	Field mustard	plastid	41.58	34.5
Bra011942.1-P	Field mustard	plastid	42.11	34.33
Bra000491.1-P	Field mustard	plastid	41.58	34.2
Bra018320.1-P	Field mustard	mitochondrion	40.0	32.2
Bra032153.1-P	Field mustard	mitochondrion, nucleus	37.89	23.38
Bra012112.1-P	Field mustard	nucleus, plastid	40.0	22.49
Bra037142.1-P	Field mustard	nucleus, plastid	37.89	18.27

Protein Annotations

EnsemblPlants:Bra021612.1	EnsemblPlants:Bra021612.1-P	EnsemblPlantsGene:Bra021612	InterPro:IPR004883	InterPro:LOB	ncoils:Coil
PANTHER:PTHR31301	PANTHER:PTHR31301:SF60	PFAM:PF03195	PFscan:PS50891	SEG:seg	UniParc:UPI00025445E4
UniProt:M4DYL6	MapMan:15.5.24	:	:	:	:

Description

AT2G30130 (E=1e-077) ASL5, LBD12, PCK1 | ASL5; DNA binding / protein binding

Coordinates

chrA04:+:13416815..13417633

Molecular Weight (calculated)

21129.2 Da

IEP (calculated)

6.332

GRAVY (calculated)

-0.354

Length

190 amino acids

Sequence
(BLAST)

001: MGGPGSSSPC ASCKLLRRRC AKDCIFAPYF PPDDPHKFAI VHKVFGASNV SKMLQELPVN QRADAVNSLV FEANARVRDP VYGCVGAISY LQNQVSQLQM
101: QLAVAQAEIL CIQMQHEQPL QSHHQVLELD QDEKALLLNN NNINNCNNDN NNLGYAMSSG QFNSNFASPS SIMQMQMQMQ DPLKQESLWT

Best Arabidopsis Sequence Match ( AT2G30130.1 )
(BLAST)

001: MGGPGSSPCA SCKLLRRRCA KDCIFAPYFP PDDPHKFAIV HKVFGASNVS KMLQELPVHQ RADAVNSLVF EANARVRDPV YGCVGAISYL QNQVSQLQMQ
101: LAVAQAEILC IQMQNEPTLQ SHHQVLELDQ DHKALLLNNN NINNCNTNNN NNNFGYAMSS GQFNSNFASP SSIMQMQMQM QMQDPLKQES LWT

Arabidopsis Description

LBD12PCK1 [Source:UniProtKB/TrEMBL;Acc:A0A178VRK1]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.