Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 4
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra032153.1-P | Field mustard | mitochondrion, nucleus | 85.21 | 86.04 |
| CDX68120 | Canola | mitochondrion, nucleus | 85.21 | 86.04 |
| CDX89590 | Canola | mitochondrion, nucleus | 85.21 | 86.04 |
| VIT_00s1247g00010.t01 | Wine grape | nucleus | 36.33 | 46.89 |
| AT1G31320.1 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 25.4 | 45.93 |
| VIT_07s0197g00030.t01 | Wine grape | nucleus | 35.05 | 44.49 |
| AT3G27650.1 | Thale cress | cytosol, nucleus, plastid | 21.86 | 42.77 |
| AT5G63090.3 | Thale cress | plastid | 25.4 | 42.47 |
| AT1G65620.1 | Thale cress | plastid | 27.01 | 42.21 |
| KRH62409 | Soybean | nucleus | 28.3 | 41.51 |
| VIT_07s0197g00020.t01 | Wine grape | nucleus | 38.91 | 41.44 |
| PGSC0003DMT400002013 | Potato | nucleus | 37.94 | 41.12 |
| Solyc02g065150.1.1 | Tomato | nucleus | 38.26 | 40.89 |
| KRH53127 | Soybean | nucleus | 26.69 | 40.69 |
| PGSC0003DMT400002011 | Potato | nucleus | 37.3 | 40.28 |
| VIT_07s0197g00040.t01 | Wine grape | cytosol, nucleus, plastid | 38.59 | 40.13 |
| AT1G16530.1 | Thale cress | mitochondrion | 21.22 | 40.0 |
| VIT_16s0022g02050.t01 | Wine grape | cytosol, mitochondrion, nucleus | 36.33 | 39.37 |
| KRH57745 | Soybean | nucleus | 34.41 | 38.77 |
| AT1G07900.1 | Thale cress | plastid | 23.15 | 37.89 |
| PGSC0003DMT400025959 | Potato | nucleus | 37.94 | 37.7 |
| Solyc02g090410.2.1 | Tomato | mitochondrion, plastid | 37.3 | 36.83 |
| KRH28509 | Soybean | nucleus | 36.33 | 36.69 |
| KRH76950 | Soybean | nucleus | 35.69 | 36.51 |
| AT5G66870.1 | Thale cress | nucleus | 36.66 | 36.42 |
| AT2G30130.1 | Thale cress | mitochondrion, nucleus | 22.51 | 36.27 |
| GSMUA_Achr6P04670_001 | Banana | mitochondrion | 32.48 | 35.07 |
| AT2G40470.1 | Thale cress | cytosol, nucleus, plastid | 23.15 | 32.14 |
| TraesCS4B01G079900.1 | Wheat | mitochondrion, nucleus, plastid | 29.26 | 32.04 |
| TraesCS4D01G078800.1 | Wheat | mitochondrion, nucleus, plastid | 29.26 | 32.04 |
| Zm00001d033335_P001 | Maize | plastid | 28.94 | 32.03 |
| EER93817 | Sorghum | plastid | 29.9 | 31.31 |
| TraesCS4A01G235100.1 | Wheat | nucleus | 28.94 | 31.25 |
| HORVU4Hr1G013630.2 | Barley | nucleus | 29.26 | 30.23 |
| AT2G28500.1 | Thale cress | plastid | 22.51 | 30.17 |
| Zm00001d013732_P001 | Maize | plastid | 28.94 | 30.1 |
| GSMUA_Achr2P17160_001 | Banana | mitochondrion | 27.01 | 27.91 |
| AT2G30340.2 | Thale cress | nucleus | 20.9 | 24.16 |
| Os03t0612400-00 | Rice | cytosol, nucleus | 30.23 | 23.68 |
Protein Annotations
| MapMan:15.5.24 | EntrezGene:816897 | ProteinID:AAC17095.1 | ProteinID:AAM14865.1 | EMBL:AB473835 | ProteinID:AEC07476.1 |
| ProteinID:AEC07477.1 | ProteinID:ANM61638.1 | ArrayExpress:AT2G23660 | EnsemblPlantsGene:AT2G23660 | RefSeq:AT2G23660 | TAIR:AT2G23660 |
| RefSeq:AT2G23660-TAIR-G | EnsemblPlants:AT2G23660.2 | TAIR:AT2G23660.2 | Unigene:At.66237 | ncoils:Coil | GO:GO:0008150 |
| InterPro:IPR004883 | Symbol:LBD10 | InterPro:LOB | InterPro:LOBD | RefSeq:NP_001154530.1 | RefSeq:NP_001323843.1 |
| RefSeq:NP_179946.1 | UniProt:O64836 | PFAM:PF03195 | PIRSF:PIRSF038155 | PO:PO:0000084 | PO:PO:0001016 |
| PO:PO:0001017 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PFscan:PS50891 | PANTHER:PTHR31301 |
| PANTHER:PTHR31301:SF22 | UniParc:UPI00000A3229 | SEG:seg | : | : | : |
Description
LBD10LOB domain-containing protein 10 [Source:UniProtKB/Swiss-Prot;Acc:O64836]
Coordinates
chr2:-:10060065..10061783
Molecular Weight (calculated)
34782.2 Da
IEP (calculated)
4.292
GRAVY (calculated)
-0.590
Length
311 amino acids
Sequence
(BLAST)
(BLAST)
001: MASTPCAACK LLRRKCTQEC VFAPYFPPTN PQKFIFVHRV FGASNVTKIL NDLPPDQRED TVNSLFYEAE ARIRDPIYGC VGLISFLQQY LKKIQQDLLT
101: AKEELVGYLG PDAVIPPPYL PPIGNNPPPN FMMSMEGMPP GVIPQGEPLM IREPNMSQQH HHQQPQDEQL QFIASDAQRM AAMMLERGDQ QGMFNGYGID
201: NNGSVTATGF NQMDVNDQGA GGSLSGPSLA LGSFGDAYQM GQETEHGHIN HDQLQTQLML QPPLQEGQEQ TEEGQFLMQP MGQENLHDEE EEEELEPPVK
301: WRMSENKEAS F
101: AKEELVGYLG PDAVIPPPYL PPIGNNPPPN FMMSMEGMPP GVIPQGEPLM IREPNMSQQH HHQQPQDEQL QFIASDAQRM AAMMLERGDQ QGMFNGYGID
201: NNGSVTATGF NQMDVNDQGA GGSLSGPSLA LGSFGDAYQM GQETEHGHIN HDQLQTQLML QPPLQEGQEQ TEEGQFLMQP MGQENLHDEE EEEELEPPVK
301: WRMSENKEAS F
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.