Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 4
- mitochondrion 1
- cytosol 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDY22713 | Canola | plastid | 78.95 | 78.53 |
CDY06285 | Canola | nucleus, plastid | 77.89 | 77.89 |
Bra018675.1-P | Field mustard | plastid | 82.11 | 75.73 |
Bra031599.1-P | Field mustard | nucleus, plastid | 78.95 | 72.46 |
CDX93609 | Canola | nucleus | 82.11 | 69.33 |
AT2G28500.1 | Thale cress | plastid | 83.16 | 68.1 |
CDX95115 | Canola | plastid | 79.47 | 66.23 |
KRH10407 | Soybean | mitochondrion | 58.42 | 64.53 |
Solyc04g050010.1.1 | Tomato | cytosol | 55.26 | 63.64 |
Solyc11g072470.1.1 | Tomato | plastid | 62.11 | 62.43 |
KRH24932 | Soybean | nucleus, plastid | 64.74 | 60.89 |
VIT_13s0019g03700.t01 | Wine grape | plastid | 62.63 | 60.41 |
VIT_06s0004g03330.t01 | Wine grape | nucleus, plastid | 64.21 | 60.4 |
KRG89044 | Soybean | nucleus, plastid | 64.74 | 60.29 |
KRH22937 | Soybean | plastid | 62.63 | 60.1 |
Solyc06g005090.2.1 | Tomato | plastid | 62.11 | 59.6 |
PGSC0003DMT400010597 | Potato | cytosol, nucleus, plastid | 54.21 | 59.54 |
VIT_06s0004g03350.t01 | Wine grape | plastid | 63.16 | 58.82 |
GSMUA_Achr6P33070_001 | Banana | plastid | 57.37 | 55.61 |
PGSC0003DMT400065346 | Potato | plastid | 61.05 | 55.5 |
PGSC0003DMT400019410 | Potato | plastid | 56.84 | 54.55 |
Solyc05g048740.2.1 | Tomato | nucleus, plastid | 61.58 | 54.42 |
KRH34918 | Soybean | plastid | 63.16 | 54.05 |
KRG91848 | Soybean | plastid | 63.16 | 54.05 |
PGSC0003DMT400065297 | Potato | plastid | 58.95 | 51.85 |
GSMUA_Achr9P04330_001 | Banana | plastid | 46.84 | 50.0 |
TraesCS1A01G062200.1 | Wheat | cytosol, plastid | 53.16 | 49.03 |
HORVU1Hr1G012720.1 | Barley | cytosol, plastid | 53.16 | 46.98 |
TraesCS1B01G080600.1 | Wheat | cytosol, plastid | 53.16 | 46.98 |
TraesCS2D01G008400.1 | Wheat | plastid | 53.16 | 46.98 |
Zm00001d035498_P001 | Maize | plastid | 54.21 | 46.61 |
EES18939 | Sorghum | plastid | 53.16 | 46.12 |
AT1G31320.1 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 41.58 | 45.93 |
EER92422 | Sorghum | plastid | 56.32 | 45.53 |
Zm00001d010978_P001 | Maize | plastid | 50.53 | 45.28 |
Zm00001d028721_P001 | Maize | plastid | 55.26 | 44.68 |
TraesCS4D01G197400.1 | Wheat | plastid | 52.11 | 44.39 |
TraesCS4B01G197100.1 | Wheat | plastid | 52.11 | 44.39 |
HORVU4Hr1G056890.2 | Barley | plastid | 52.11 | 44.2 |
TraesCS4A01G107300.1 | Wheat | plastid | 51.58 | 43.95 |
Zm00001d047752_P001 | Maize | plastid | 55.26 | 43.93 |
Os03t0287400-01 | Rice | plastid | 54.74 | 43.51 |
AT1G16530.1 | Thale cress | mitochondrion | 36.32 | 41.82 |
AT2G30130.1 | Thale cress | mitochondrion, nucleus | 41.58 | 40.93 |
Solyc06g075330.1.1 | Tomato | golgi, nucleus, plastid | 50.53 | 39.67 |
AT3G27650.1 | Thale cress | cytosol, nucleus, plastid | 32.63 | 38.99 |
AT5G63090.3 | Thale cress | plastid | 34.74 | 35.48 |
AT1G65620.1 | Thale cress | plastid | 36.32 | 34.67 |
AT2G40470.1 | Thale cress | cytosol, nucleus, plastid | 36.84 | 31.25 |
AT2G30340.2 | Thale cress | nucleus | 33.16 | 23.42 |
AT2G23660.2 | Thale cress | mitochondrion, nucleus | 37.89 | 23.15 |
AT5G66870.1 | Thale cress | nucleus | 36.32 | 22.04 |
Protein Annotations
MapMan:15.5.24 | EntrezGene:837305 | UniProt:A0A178WM56 | ProteinID:AAF75065.1 | EMBL:AB473841 | ProteinID:AEE28208.1 |
ArrayExpress:AT1G07900 | EnsemblPlantsGene:AT1G07900 | RefSeq:AT1G07900 | TAIR:AT1G07900 | RefSeq:AT1G07900-TAIR-G | EnsemblPlants:AT1G07900.1 |
TAIR:AT1G07900.1 | ncoils:Coil | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
GO:GO:0005739 | GO:GO:0008150 | InterPro:IPR004883 | Symbol:LBD1 | InterPro:LOB | RefSeq:NP_172268.1 |
ProteinID:OAP19359.1 | PFAM:PF03195 | PFscan:PS50891 | PANTHER:PTHR31301 | PANTHER:PTHR31301:SF6 | UniProt:Q9LQR0 |
UniParc:UPI000009D67E | SEG:seg | : | : | : | : |
Description
LBD1LBD1 [Source:UniProtKB/TrEMBL;Acc:A0A178WM56]
Coordinates
chr1:+:2442570..2443746
Molecular Weight (calculated)
21411.5 Da
IEP (calculated)
5.282
GRAVY (calculated)
-0.339
Length
190 amino acids
Sequence
(BLAST)
(BLAST)
001: MESKSDASVA TTPIISSSSS PPPSLSPRVV LSPCAACKIL RRRCAERCVL APYFPPTDPA KFTIAHRVFG ASNIIKFLQE LPESQRTDAV NSMVYEAEAR
101: IRDPVYGCAG AIYHLQRQVS ELQAQLAKAQ VEMVNMQFQR SNLLELIYNM DQQQKQEQDN MSFESNDLGF LEDKSNTNSS MLWWDPLWTC
101: IRDPVYGCAG AIYHLQRQVS ELQAQLAKAQ VEMVNMQFQR SNLLELIYNM DQQQKQEQDN MSFESNDLGF LEDKSNTNSS MLWWDPLWTC
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.