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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • nucleus 2
  • plastid 4
  • mitochondrion 1
  • cytosol 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY22713 Canola plastid 78.95 78.53
CDY06285 Canola nucleus, plastid 77.89 77.89
Bra018675.1-P Field mustard plastid 82.11 75.73
Bra031599.1-P Field mustard nucleus, plastid 78.95 72.46
CDX93609 Canola nucleus 82.11 69.33
AT2G28500.1 Thale cress plastid 83.16 68.1
CDX95115 Canola plastid 79.47 66.23
KRH10407 Soybean mitochondrion 58.42 64.53
Solyc04g050010.1.1 Tomato cytosol 55.26 63.64
Solyc11g072470.1.1 Tomato plastid 62.11 62.43
KRH24932 Soybean nucleus, plastid 64.74 60.89
VIT_13s0019g03700.t01 Wine grape plastid 62.63 60.41
VIT_06s0004g03330.t01 Wine grape nucleus, plastid 64.21 60.4
KRG89044 Soybean nucleus, plastid 64.74 60.29
KRH22937 Soybean plastid 62.63 60.1
Solyc06g005090.2.1 Tomato plastid 62.11 59.6
PGSC0003DMT400010597 Potato cytosol, nucleus, plastid 54.21 59.54
VIT_06s0004g03350.t01 Wine grape plastid 63.16 58.82
GSMUA_Achr6P33070_001 Banana plastid 57.37 55.61
PGSC0003DMT400065346 Potato plastid 61.05 55.5
PGSC0003DMT400019410 Potato plastid 56.84 54.55
Solyc05g048740.2.1 Tomato nucleus, plastid 61.58 54.42
KRH34918 Soybean plastid 63.16 54.05
KRG91848 Soybean plastid 63.16 54.05
PGSC0003DMT400065297 Potato plastid 58.95 51.85
GSMUA_Achr9P04330_001 Banana plastid 46.84 50.0
TraesCS1A01G062200.1 Wheat cytosol, plastid 53.16 49.03
HORVU1Hr1G012720.1 Barley cytosol, plastid 53.16 46.98
TraesCS1B01G080600.1 Wheat cytosol, plastid 53.16 46.98
TraesCS2D01G008400.1 Wheat plastid 53.16 46.98
Zm00001d035498_P001 Maize plastid 54.21 46.61
EES18939 Sorghum plastid 53.16 46.12
AT1G31320.1 Thale cress cytosol, mitochondrion, nucleus, plastid 41.58 45.93
EER92422 Sorghum plastid 56.32 45.53
Zm00001d010978_P001 Maize plastid 50.53 45.28
Zm00001d028721_P001 Maize plastid 55.26 44.68
TraesCS4D01G197400.1 Wheat plastid 52.11 44.39
TraesCS4B01G197100.1 Wheat plastid 52.11 44.39
HORVU4Hr1G056890.2 Barley plastid 52.11 44.2
TraesCS4A01G107300.1 Wheat plastid 51.58 43.95
Zm00001d047752_P001 Maize plastid 55.26 43.93
Os03t0287400-01 Rice plastid 54.74 43.51
AT1G16530.1 Thale cress mitochondrion 36.32 41.82
AT2G30130.1 Thale cress mitochondrion, nucleus 41.58 40.93
Solyc06g075330.1.1 Tomato golgi, nucleus, plastid 50.53 39.67
AT3G27650.1 Thale cress cytosol, nucleus, plastid 32.63 38.99
AT5G63090.3 Thale cress plastid 34.74 35.48
AT1G65620.1 Thale cress plastid 36.32 34.67
AT2G40470.1 Thale cress cytosol, nucleus, plastid 36.84 31.25
AT2G30340.2 Thale cress nucleus 33.16 23.42
AT2G23660.2 Thale cress mitochondrion, nucleus 37.89 23.15
AT5G66870.1 Thale cress nucleus 36.32 22.04
Protein Annotations
MapMan:15.5.24EntrezGene:837305UniProt:A0A178WM56ProteinID:AAF75065.1EMBL:AB473841ProteinID:AEE28208.1
ArrayExpress:AT1G07900EnsemblPlantsGene:AT1G07900RefSeq:AT1G07900TAIR:AT1G07900RefSeq:AT1G07900-TAIR-GEnsemblPlants:AT1G07900.1
TAIR:AT1G07900.1ncoils:CoilGO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0005739GO:GO:0008150InterPro:IPR004883Symbol:LBD1InterPro:LOBRefSeq:NP_172268.1
ProteinID:OAP19359.1PFAM:PF03195PFscan:PS50891PANTHER:PTHR31301PANTHER:PTHR31301:SF6UniProt:Q9LQR0
UniParc:UPI000009D67ESEG:seg::::
Description
LBD1LBD1 [Source:UniProtKB/TrEMBL;Acc:A0A178WM56]
Coordinates
chr1:+:2442570..2443746
Molecular Weight (calculated)
21411.5 Da
IEP (calculated)
5.282
GRAVY (calculated)
-0.339
Length
190 amino acids
Sequence
(BLAST)
001: MESKSDASVA TTPIISSSSS PPPSLSPRVV LSPCAACKIL RRRCAERCVL APYFPPTDPA KFTIAHRVFG ASNIIKFLQE LPESQRTDAV NSMVYEAEAR
101: IRDPVYGCAG AIYHLQRQVS ELQAQLAKAQ VEMVNMQFQR SNLLELIYNM DQQQKQEQDN MSFESNDLGF LEDKSNTNSS MLWWDPLWTC
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.