Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 4
- cytosol 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU4Hr1G056890.2 | Barley | plastid | 70.29 | 75.0 |
| TraesCS4D01G197400.1 | Wheat | plastid | 69.46 | 74.44 |
| TraesCS4B01G197100.1 | Wheat | plastid | 69.04 | 73.99 |
| TraesCS4A01G107300.1 | Wheat | plastid | 67.78 | 72.65 |
| Zm00001d028721_P001 | Maize | plastid | 70.29 | 71.49 |
| EER92422 | Sorghum | plastid | 69.87 | 71.06 |
| Zm00001d047752_P001 | Maize | plastid | 68.2 | 68.2 |
| Solyc11g072470.1.1 | Tomato | plastid | 48.54 | 61.38 |
| KRH10407 | Soybean | mitochondrion | 43.1 | 59.88 |
| KRH24932 | Soybean | nucleus, plastid | 49.79 | 58.91 |
| VIT_06s0004g03330.t01 | Wine grape | nucleus, plastid | 49.37 | 58.42 |
| KRG89044 | Soybean | nucleus, plastid | 49.37 | 57.84 |
| Solyc06g005090.2.1 | Tomato | plastid | 47.7 | 57.58 |
| VIT_13s0019g03700.t01 | Wine grape | plastid | 47.28 | 57.36 |
| GSMUA_Achr7P15500_001 | Banana | nucleus | 46.86 | 57.14 |
| VIT_06s0004g03350.t01 | Wine grape | plastid | 48.12 | 56.37 |
| KRH22937 | Soybean | plastid | 46.44 | 56.06 |
| GSMUA_Achr4P16790_001 | Banana | plastid | 44.35 | 55.79 |
| PGSC0003DMT400065346 | Potato | plastid | 48.54 | 55.5 |
| GSMUA_Achr8P09700_001 | Banana | cytosol | 46.86 | 54.9 |
| AT1G07900.1 | Thale cress | plastid | 43.51 | 54.74 |
| KRG91848 | Soybean | plastid | 48.12 | 51.8 |
| KRH34918 | Soybean | plastid | 47.28 | 50.9 |
| CDY22713 | Canola | plastid | 39.33 | 49.21 |
| Bra018675.1-P | Field mustard | plastid | 41.84 | 48.54 |
| CDY06285 | Canola | nucleus, plastid | 38.49 | 48.42 |
| GSMUA_Achr10P... | Banana | plastid | 49.37 | 47.2 |
| CDY15755 | Canola | plastid | 42.68 | 47.0 |
| CDY31207 | Canola | plastid | 42.26 | 46.76 |
| PGSC0003DMT400065297 | Potato | plastid | 42.26 | 46.76 |
| CDY62454 | Canola | plastid | 42.26 | 46.54 |
| CDY04570 | Canola | plastid | 42.26 | 46.33 |
| CDX77182 | Canola | plastid | 41.84 | 46.08 |
| AT2G28500.1 | Thale cress | plastid | 44.35 | 45.69 |
| Bra000491.1-P | Field mustard | plastid | 43.93 | 45.45 |
| CDX83290 | Canola | plastid | 43.93 | 45.45 |
| Bra031599.1-P | Field mustard | nucleus, plastid | 39.33 | 45.41 |
| Bra035698.1-P | Field mustard | plastid | 43.1 | 44.98 |
| Bra011942.1-P | Field mustard | plastid | 43.51 | 44.64 |
| CDX93609 | Canola | nucleus | 41.84 | 44.44 |
| GSMUA_Achr3P17800_001 | Banana | mitochondrion, plastid | 43.1 | 44.02 |
| CDX95115 | Canola | plastid | 41.84 | 43.86 |
| Os12t0106200-01 | Rice | mitochondrion | 26.78 | 41.03 |
| Os11t0106900-01 | Rice | mitochondrion | 26.78 | 41.03 |
| Os05t0346800-00 | Rice | cytosol, nucleus | 29.71 | 34.3 |
| Os01t0169400-01 | Rice | plastid | 29.71 | 28.29 |
| Os01t0825000-01 | Rice | cytosol | 28.87 | 27.49 |
| Os05t0165450-00 | Rice | extracellular | 26.78 | 25.81 |
| Os01t0889400-02 | Rice | plastid | 27.2 | 24.16 |
| Os05t0417000-00 | Rice | plastid | 26.36 | 22.58 |
| Os03t0612400-00 | Rice | cytosol, nucleus | 26.78 | 16.12 |
Protein Annotations
| EMBL:AK072515 | EnsemblPlants:Os03t0287400-01 | EnsemblPlantsGene:Os03g0287400 | EntrezGene:4332483 | InterPro:IPR004883 | InterPro:LOB |
| ncoils:Coil | PANTHER:PTHR31301 | PANTHER:PTHR31301:SF29 | PFAM:PF03195 | PFscan:PS50891 | ProteinID:ABF95365.1 |
| ProteinID:BAF11692.1 | ProteinID:BAS83637.1 | ProteinID:EAZ26529.1 | RefSeq:XP_015629326.1 | SEG:seg | UniParc:UPI0000DB41C0 |
| UniProt:Q10N09 | MapMan:15.5.24 | : | : | : | : |
Description
Similar to LOB domain protein 4. (Os03t0287400-01)
Coordinates
chr3:-:9916095..9917286
Molecular Weight (calculated)
25558.1 Da
IEP (calculated)
6.494
GRAVY (calculated)
-0.241
Length
239 amino acids
Sequence
(BLAST)
(BLAST)
001: MDHAGNTVAN VTVAQQPHYG RSVSPPSRVS SCSPPPPPVG TASLLVGNTS SSSSPTTTVV LSPCAACKVL RRRCADGCVL APYFPPTEPT KFTTAHRVFG
101: ASNIIKLLQE LPESARADAV SSMVYEAEAR LRDPVYGCAG AVCRLQKEAN ELKVQLARAQ ADLLNARAQH DNLVALVCVE LAHRRRDDDQ QLEYQAPAPP
201: LPHPAEYCSG GAGFGATVYQ PFYDSDLDSA AWGEPQLWT
101: ASNIIKLLQE LPESARADAV SSMVYEAEAR LRDPVYGCAG AVCRLQKEAN ELKVQLARAQ ADLLNARAQH DNLVALVCVE LAHRRRDDDQ QLEYQAPAPP
201: LPHPAEYCSG GAGFGATVYQ PFYDSDLDSA AWGEPQLWT
001: MESKSDASVA TTPIISSSSS PPPSLSPRVV LSPCAACKIL RRRCAERCVL APYFPPTDPA KFTIAHRVFG ASNIIKFLQE LPESQRTDAV NSMVYEAEAR
101: IRDPVYGCAG AIYHLQRQVS ELQAQLAKAQ VEMVNMQFQR SNLLELIYNM DQQQKQEQDN MSFESNDLGF LEDKSNTNSS MLWWDPLWTC
101: IRDPVYGCAG AIYHLQRQVS ELQAQLAKAQ VEMVNMQFQR SNLLELIYNM DQQQKQEQDN MSFESNDLGF LEDKSNTNSS MLWWDPLWTC
Arabidopsis Description
LBD1LBD1 [Source:UniProtKB/TrEMBL;Acc:A0A178WM56]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.