Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
- nucleus 2
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os03t0246900-00 | nucleus |
| Os10t0162600-00 | nucleus |
| Os12t0572000-01 | nucleus |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G260000.1 | Wheat | plastid | 74.55 | 78.79 |
| TraesCS1D01G259900.1 | Wheat | plastid | 73.84 | 78.33 |
| TraesCS1B01G270400.1 | Wheat | plastid | 73.84 | 78.33 |
| HORVU1Hr1G064640.3 | Barley | plastid | 73.12 | 73.38 |
| Os01t0889400-02 | Rice | plastid | 66.31 | 68.77 |
| OQU78015 | Sorghum | plastid | 69.53 | 62.99 |
| Solyc03g063140.2.1 | Tomato | nucleus, plastid | 36.56 | 58.62 |
| AT1G65620.1 | Thale cress | plastid | 39.07 | 54.77 |
| PGSC0003DMT400002549 | Potato | plastid | 36.92 | 54.5 |
| Bra039733.1-P | Field mustard | nucleus, plastid | 39.07 | 53.96 |
| CDY16414 | Canola | nucleus, plastid | 39.07 | 53.96 |
| CDY46781 | Canola | nucleus, plastid | 39.07 | 53.96 |
| VIT_00s0340g00090.t01 | Wine grape | nucleus | 38.71 | 50.0 |
| KRH13283 | Soybean | nucleus | 37.63 | 49.53 |
| KRH20638 | Soybean | nucleus | 37.63 | 49.07 |
| Solyc11g008830.1.1 | Tomato | plastid | 37.63 | 45.65 |
| Os11t0106900-01 | Rice | mitochondrion | 25.09 | 44.87 |
| Os12t0106200-01 | Rice | mitochondrion | 25.09 | 44.87 |
| KRG88909 | Soybean | nucleus | 34.05 | 44.39 |
| Os01t0169400-01 | Rice | plastid | 35.13 | 39.04 |
| Os05t0346800-00 | Rice | cytosol, nucleus | 26.88 | 36.23 |
| Os01t0825000-01 | Rice | cytosol | 25.45 | 28.29 |
| Os05t0165450-00 | Rice | extracellular | 24.01 | 27.02 |
| Os03t0287400-01 | Rice | plastid | 22.58 | 26.36 |
| Os03t0612400-00 | Rice | cytosol, nucleus | 31.54 | 22.17 |
Protein Annotations
| EnsemblPlants:Os05t0417000-00 | EnsemblPlantsGene:Os05g0417000 | EntrezGene:4338805 | InterPro:IPR004883 | InterPro:LOB | ncoils:Coil |
| PANTHER:PTHR31301 | PANTHER:PTHR31301:SF26 | PFAM:PF03195 | PFscan:PS50891 | ProteinID:AAT77385.1 | ProteinID:AAU10781.1 |
| ProteinID:BAF17473.1 | ProteinID:BAS94044.1 | RefSeq:XP_015640070.1 | RefSeq:XP_015640071.1 | SEG:seg | UniParc:UPI00003FE6FA |
| UniProt:Q6AT73 | MapMan:15.5.24 | : | : | : | : |
Description
Similar to LOB domain protein 6 (ASYMMETRIC LEAVES2). (Os05t0417000-00)
Coordinates
chr5:-:20417514..20418507
Molecular Weight (calculated)
28046.0 Da
IEP (calculated)
8.134
GRAVY (calculated)
-0.004
Length
279 amino acids
Sequence
(BLAST)
(BLAST)
001: MAASSSASSL PLSSGSVITV SSSPAVGASS GGGGGTGSPC AACKFLRRKC QPDCVFAPYF PPDNPQKFVH VHRVFGASNV TKLLNELHPY QREDAVNSLA
101: YEADMRLRDP VYGCVGVISV LQHQLRQLQQ DLSRARFELS KYQAAVAVSS SNGQAAAAAA MVDHFIGSAV QPNCTQNFIS GGGVAAAAIG IGGGAGGGFV
201: NDHHQFSAVQ MLARSYDGES AVARLGGAVN VSGGGGYEFG YSSAMGGAGG PMSGLGPLGG GTFLKPGTAG GGDRPTAAQ
101: YEADMRLRDP VYGCVGVISV LQHQLRQLQQ DLSRARFELS KYQAAVAVSS SNGQAAAAAA MVDHFIGSAV QPNCTQNFIS GGGVAAAAIG IGGGAGGGFV
201: NDHHQFSAVQ MLARSYDGES AVARLGGAVN VSGGGGYEFG YSSAMGGAGG PMSGLGPLGG GTFLKPGTAG GGDRPTAAQ
001: MASSSTNSPC AACKFLRRKC QPECVFAPYF PPDQPQKFAN VHKVFGASNV TKLLNELHPS QREDAVNSLA YEADMRLRDP VYGCVGVISL LQHQLRQLQI
101: DLSCAKSELS KYQSLGILAA THQSLGINLL AGAADGTATA VRDHYHHHQF FPREQMFGGL DVPAGNNYDG GILAIGQITQ FQQPRAAAGD DGRRTVDPS
101: DLSCAKSELS KYQSLGILAA THQSLGINLL AGAADGTATA VRDHYHHHQF FPREQMFGGL DVPAGNNYDG GILAIGQITQ FQQPRAAAGD DGRRTVDPS
Arabidopsis Description
AS2AS2 [Source:UniProtKB/TrEMBL;Acc:A0A178WIA0]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.