Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 7
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os03t0246900-00 | nucleus |
| Os10t0162600-00 | nucleus |
| Os12t0572000-01 | nucleus |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d042560_P002 | Maize | plastid | 79.18 | 81.92 |
| TraesCS3B01G435700.1 | Wheat | plastid | 78.44 | 81.47 |
| TraesCS3A01G402300.1 | Wheat | plastid | 78.44 | 81.47 |
| TraesCS3D01G397200.1 | Wheat | plastid | 78.07 | 81.08 |
| Os05t0417000-00 | Rice | plastid | 68.77 | 66.31 |
| OQU88012 | Sorghum | mitochondrion, vacuole | 79.93 | 64.76 |
| Solyc03g063140.2.1 | Tomato | nucleus, plastid | 36.8 | 56.9 |
| HORVU3Hr1G090240.2 | Barley | plastid | 53.9 | 53.7 |
| HORVU3Hr1G090250.5 | Barley | plastid | 53.9 | 53.7 |
| PGSC0003DMT400002549 | Potato | plastid | 36.8 | 52.38 |
| AT1G65620.1 | Thale cress | plastid | 38.29 | 51.76 |
| Bra039733.1-P | Field mustard | nucleus, plastid | 38.29 | 50.99 |
| CDY46781 | Canola | nucleus, plastid | 38.29 | 50.99 |
| CDY16414 | Canola | nucleus, plastid | 38.29 | 50.99 |
| KRH20638 | Soybean | nucleus | 37.17 | 46.73 |
| KRH13283 | Soybean | nucleus | 36.8 | 46.7 |
| VIT_00s0340g00090.t01 | Wine grape | nucleus | 37.17 | 46.3 |
| Solyc11g008830.1.1 | Tomato | plastid | 39.41 | 46.09 |
| Os11t0106900-01 | Rice | mitochondrion | 26.02 | 44.87 |
| Os12t0106200-01 | Rice | mitochondrion | 26.02 | 44.87 |
| KRG88909 | Soybean | nucleus | 35.32 | 44.39 |
| Os01t0169400-01 | Rice | plastid | 34.2 | 36.65 |
| Os05t0346800-00 | Rice | cytosol, nucleus | 27.51 | 35.75 |
| Os03t0287400-01 | Rice | plastid | 24.16 | 27.2 |
| Os01t0825000-01 | Rice | cytosol | 24.91 | 26.69 |
| Os05t0165450-00 | Rice | extracellular | 23.42 | 25.4 |
| Os03t0612400-00 | Rice | cytosol, nucleus | 31.97 | 21.66 |
Protein Annotations
| MapMan:15.5.24 | EntrezGene:4324906 | EMBL:AB200237 | EMBL:AK071407 | EMBL:AK119575 | ProteinID:BAB92647.1 |
| ProteinID:BAF06960.1 | ProteinID:BAS75644.1 | ncoils:Coil | ProteinID:EEE55782.1 | EMBL:EF540766 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0007275 | GO:GO:0008150 | InterPro:IPR004883 |
| InterPro:LOB | EnsemblPlantsGene:Os01g0889400 | EnsemblPlants:Os01t0889400-02 | PFAM:PF03195 | PFscan:PS50891 | PANTHER:PTHR31301 |
| PANTHER:PTHR31301:SF33 | UniProt:Q8LQH4 | UniParc:UPI00000A9917 | RefSeq:XP_015634701.1 | SEG:seg | : |
Description
CRL1L3LOB (LATERAL ORGAN BOUNDARIES) domain-containing protein, Regulation of empty-glume identity, floral organ number control and female gametophyte development (Os01t0889400-01);Similar to LOB domain protein 6 (ASYMMETRIC LEAVES2). (Os01t0889400-02)
Coordinates
chr1:+:38676730..38679522
Molecular Weight (calculated)
27623.4 Da
IEP (calculated)
8.064
GRAVY (calculated)
-0.080
Length
269 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSSASSVP APSGSVITIA SASASAAANT AACGTGSPCA ACKFLRRKCQ PDCVFAPYFP PDNPQKFVHV HRVFGASNVT KLLNELHPYQ REDAVNSLAY
101: EADMRLRDPV YGCVAIISIL QRNLRQLQQD LARAKFELSK YQQAAAAAAA ASASTGTNNG PHSMAEFIGN AVPNGAQSFI NVGHSAALAS VGGAAACFGQ
201: EQQFSAVHML SRSYEGEPIA RLGGNGGYEF GYSTSMAGGG HMSGLGALGG APFLKSGIAG SDERQGAGQ
101: EADMRLRDPV YGCVAIISIL QRNLRQLQQD LARAKFELSK YQQAAAAAAA ASASTGTNNG PHSMAEFIGN AVPNGAQSFI NVGHSAALAS VGGAAACFGQ
201: EQQFSAVHML SRSYEGEPIA RLGGNGGYEF GYSTSMAGGG HMSGLGALGG APFLKSGIAG SDERQGAGQ
001: MASSSTNSPC AACKFLRRKC QPECVFAPYF PPDQPQKFAN VHKVFGASNV TKLLNELHPS QREDAVNSLA YEADMRLRDP VYGCVGVISL LQHQLRQLQI
101: DLSCAKSELS KYQSLGILAA THQSLGINLL AGAADGTATA VRDHYHHHQF FPREQMFGGL DVPAGNNYDG GILAIGQITQ FQQPRAAAGD DGRRTVDPS
101: DLSCAKSELS KYQSLGILAA THQSLGINLL AGAADGTATA VRDHYHHHQF FPREQMFGGL DVPAGNNYDG GILAIGQITQ FQQPRAAAGD DGRRTVDPS
Arabidopsis Description
AS2AS2 [Source:UniProtKB/TrEMBL;Acc:A0A178WIA0]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.