Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- nucleus 1
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU0Hr1G020290.1 | |
| HORVU4Hr1G063160.1 | nucleus |
| HORVU5Hr1G021230.1 | nucleus |
| HORVU5Hr1G112000.2 | nucleus |
| HORVU6Hr1G071420.2 | nucleus |
| HORVU7Hr1G046690.1 | |
| HORVU7Hr1G077530.1 | nucleus |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU3Hr1G090240.2 | Barley | plastid | 100.0 | 100.0 |
| TraesCS3D01G397200.1 | Wheat | plastid | 59.63 | 62.16 |
| TraesCS3A01G402300.1 | Wheat | plastid | 59.63 | 62.16 |
| TraesCS3B01G435700.1 | Wheat | plastid | 58.89 | 61.39 |
| Solyc03g063140.2.1 | Tomato | nucleus, plastid | 36.3 | 56.32 |
| Os01t0889400-02 | Rice | plastid | 53.7 | 53.9 |
| Zm00001d042560_P002 | Maize | plastid | 51.48 | 53.46 |
| PGSC0003DMT400002549 | Potato | plastid | 36.3 | 51.85 |
| AT1G65620.1 | Thale cress | plastid | 37.41 | 50.75 |
| HORVU1Hr1G064640.3 | Barley | plastid | 52.22 | 50.72 |
| Bra039733.1-P | Field mustard | nucleus, plastid | 37.04 | 49.51 |
| CDY16414 | Canola | nucleus, plastid | 37.04 | 49.51 |
| CDY46781 | Canola | nucleus, plastid | 37.04 | 49.51 |
| VIT_00s0340g00090.t01 | Wine grape | nucleus | 36.3 | 45.37 |
| KRH13283 | Soybean | nucleus | 34.81 | 44.34 |
| KRH20638 | Soybean | nucleus | 34.81 | 43.93 |
| KRG88909 | Soybean | nucleus | 34.07 | 42.99 |
| Solyc11g008830.1.1 | Tomato | plastid | 36.3 | 42.61 |
| OQU88012 | Sorghum | mitochondrion, vacuole | 52.22 | 42.47 |
| HORVU5Hr1G047610.1 | Barley | plastid | 25.56 | 38.98 |
| HORVU4Hr1G002480.2 | Barley | cytosol | 25.19 | 38.2 |
| HORVU1Hr1G024490.1 | Barley | cytosol, mitochondrion, nucleus | 23.33 | 37.95 |
| HORVU1Hr1G012720.1 | Barley | cytosol, plastid | 25.93 | 32.56 |
| HORVU3Hr1G016690.1 | Barley | plastid | 33.33 | 32.49 |
| HORVU4Hr1G056890.2 | Barley | plastid | 25.56 | 30.8 |
| HORVU1Hr1G060290.2 | Barley | endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 25.93 | 30.04 |
| HORVU4Hr1G013630.2 | Barley | nucleus | 30.37 | 27.24 |
| HORVU3Hr1G088440.1 | Barley | plastid | 23.7 | 19.39 |
Protein Annotations
| EnsemblPlants:HORVU3Hr1G090250.5 | EnsemblPlantsGene:HORVU3Hr1G090250 | InterPro:IPR004883 | InterPro:LOB | ncoils:Coil | PANTHER:PTHR31301 |
| PANTHER:PTHR31301:SF26 | PFAM:PF03195 | PFscan:PS50891 | SEG:seg | UniParc:UPI000B484369 | UniProt:A0A287M8B4 |
| MapMan:15.5.24 | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr3H:+:631066626..631067517
Molecular Weight (calculated)
30021.1 Da
IEP (calculated)
11.961
GRAVY (calculated)
-0.647
Length
270 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSSASSLP APGGSVITLA ASSAGGNGAG GVCGTGSPCA ACKFLRRKCQ PDCVFAPYFP PDNPQKFVHV HRVFGASNVT KLLNELHPYQ REDAVNSLAY
101: EADMRLRDPV YGCVAVISIL QRNLRQLQQD LARAKYELSK YQWWCLTVTL ASVSGGAKRV AGDGGVHRQR GPERRGELHQ RGTLRGARLR RRRDGLRARP
201: AVRCRADAVQ ELRGSRAHRE AGTERQLRVR VLGVRDDRRR IGARPRHARR LAVPEARHRR QRREGRRRAV
101: EADMRLRDPV YGCVAVISIL QRNLRQLQQD LARAKYELSK YQWWCLTVTL ASVSGGAKRV AGDGGVHRQR GPERRGELHQ RGTLRGARLR RRRDGLRARP
201: AVRCRADAVQ ELRGSRAHRE AGTERQLRVR VLGVRDDRRR IGARPRHARR LAVPEARHRR QRREGRRRAV
001: MASSSTNSPC AACKFLRRKC QPECVFAPYF PPDQPQKFAN VHKVFGASNV TKLLNELHPS QREDAVNSLA YEADMRLRDP VYGCVGVISL LQHQLRQLQI
101: DLSCAKSELS KYQSLGILAA THQSLGINLL AGAADGTATA VRDHYHHHQF FPREQMFGGL DVPAGNNYDG GILAIGQITQ FQQPRAAAGD DGRRTVDPS
101: DLSCAKSELS KYQSLGILAA THQSLGINLL AGAADGTATA VRDHYHHHQF FPREQMFGGL DVPAGNNYDG GILAIGQITQ FQQPRAAAGD DGRRTVDPS
Arabidopsis Description
AS2AS2 [Source:UniProtKB/TrEMBL;Acc:A0A178WIA0]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.