Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 2
- extracellular 2
- endoplasmic reticulum 1
- vacuole 2
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G340000.1 | Wheat | cytosol | 68.18 | 90.73 |
| TraesCS3A01G346300.1 | Wheat | cytosol | 68.18 | 90.0 |
| TraesCS3B01G378100.1 | Wheat | plastid | 77.58 | 87.67 |
| Os01t0825000-01 | Rice | cytosol | 53.94 | 70.92 |
| Zm00001d043036_P001 | Maize | cytosol | 50.61 | 70.46 |
| OQU87769 | Sorghum | cytosol | 52.73 | 69.88 |
| HORVU1Hr1G024490.1 | Barley | cytosol, mitochondrion, nucleus | 32.73 | 65.06 |
| GSMUA_Achr11P... | Banana | cytosol | 40.91 | 62.21 |
| VIT_13s0067g02380.t01 | Wine grape | nucleus | 41.52 | 61.16 |
| GSMUA_Achr5P07460_001 | Banana | nucleus | 38.48 | 60.77 |
| GSMUA_AchrUn_... | Banana | plastid | 33.33 | 59.78 |
| GSMUA_Achr7P22200_001 | Banana | nucleus | 37.58 | 58.77 |
| KRH53776 | Soybean | nucleus | 38.48 | 57.21 |
| KRH64170 | Soybean | nucleus | 38.18 | 56.76 |
| Solyc06g050430.2.1 | Tomato | nucleus | 36.97 | 56.22 |
| VIT_06s0004g07790.t01 | Wine grape | cytosol | 38.48 | 55.46 |
| Solyc06g082430.1.1 | Tomato | cytosol, nucleus, plastid | 36.36 | 51.72 |
| Solyc06g007390.2.1 | Tomato | nucleus | 36.36 | 50.42 |
| PGSC0003DMT400052995 | Potato | plastid | 30.3 | 49.75 |
| PGSC0003DMT400078265 | Potato | cytosol, nucleus, plastid | 33.33 | 49.55 |
| KRH17149 | Soybean | cytosol, mitochondrion, nucleus | 35.76 | 47.39 |
| KRH72805 | Soybean | cytosol, mitochondrion, nucleus | 36.06 | 47.04 |
| CDY02059 | Canola | mitochondrion | 33.03 | 46.19 |
| Bra018320.1-P | Field mustard | mitochondrion | 32.73 | 45.76 |
| CDY10726 | Canola | mitochondrion | 32.73 | 45.76 |
| AT2G30340.2 | Thale cress | nucleus | 35.45 | 43.49 |
| HORVU5Hr1G047610.1 | Barley | plastid | 23.03 | 42.94 |
| HORVU4Hr1G002480.2 | Barley | cytosol | 22.12 | 41.01 |
| PGSC0003DMT400074783 | Potato | mitochondrion | 32.42 | 39.05 |
| HORVU1Hr1G060290.2 | Barley | endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 23.94 | 33.91 |
| HORVU4Hr1G056890.2 | Barley | plastid | 21.82 | 32.14 |
| HORVU1Hr1G012720.1 | Barley | cytosol, plastid | 20.91 | 32.09 |
| HORVU3Hr1G016690.1 | Barley | plastid | 21.21 | 25.27 |
| HORVU3Hr1G090250.5 | Barley | plastid | 19.39 | 23.7 |
| HORVU3Hr1G090240.2 | Barley | plastid | 19.39 | 23.7 |
| HORVU4Hr1G013630.2 | Barley | nucleus | 21.52 | 23.59 |
| HORVU1Hr1G064640.3 | Barley | plastid | 19.09 | 22.66 |
Protein Annotations
| EnsemblPlants:HORVU3Hr1G088440.1 | EnsemblPlantsGene:HORVU3Hr1G088440 | InterPro:IPR004883 | InterPro:LOB | ncoils:Coil | PANTHER:PTHR31301 |
| PANTHER:PTHR31301:SF20 | PFAM:PF03195 | PFscan:PS50891 | SEG:seg | UniParc:UPI000B46E17A | UniProt:A0A287M5A9 |
| MapMan:15.5.24 | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr3H:+:624909985..624911616
Molecular Weight (calculated)
35097.1 Da
IEP (calculated)
7.845
GRAVY (calculated)
0.022
Length
330 amino acids
Sequence
(BLAST)
(BLAST)
001: TNRVNVPWLG FLANISSSSL AHLLTTNCVH ALRPPSPSLM PCLLSTLSFL AIPNFTLLYH VPVRLSSPRS QLFLCHSPSP KRGEHASMST ERERLDEIGK
101: KIKREPDPAA IAGVVVAVSP TEHHVHRRLG PGIGGAVNIA TPCAACKLLR RRCAHECPFA PYFSPHEPHK FAAVHKVFGA SNVSKMLLVP EAERADAASS
201: LVYEANLRLR DPVYGCMGAI SMLQQQVNAL EAELEAVRAE IFKHRYRQAG VGVGVGAANL IVDDGAAAAG GFMPPSTTLV HTADVVSVAE AGQEVATLPA
301: TPTATAYAAG QPSSADYSSL NTSEHDAYFG
101: KIKREPDPAA IAGVVVAVSP TEHHVHRRLG PGIGGAVNIA TPCAACKLLR RRCAHECPFA PYFSPHEPHK FAAVHKVFGA SNVSKMLLVP EAERADAASS
201: LVYEANLRLR DPVYGCMGAI SMLQQQVNAL EAELEAVRAE IFKHRYRQAG VGVGVGAANL IVDDGAAAAG GFMPPSTTLV HTADVVSVAE AGQEVATLPA
301: TPTATAYAAG QPSSADYSSL NTSEHDAYFG
001: MSRERERFEE IGKKIKREAD AWPHQMAGIR RPMSGPPGTL NTITPCAACK LLRRRCAQEC PFSPYFSPHE PHKFASVHKV FGASNVSKML MEVPESQRAD
101: AANSLVYEAN VRLRDPVYGC MGAISALQQQ VQALQAELTA VRSEILKYKQ REAVATLIVP SNSQVAGFHN SGGVSVIAPP PQRPTTPPQP TTAHPPSPSS
201: CVFSQPTTRD LEYGNIESEN NYFG
101: AANSLVYEAN VRLRDPVYGC MGAISALQQQ VQALQAELTA VRSEILKYKQ REAVATLIVP SNSQVAGFHN SGGVSVIAPP PQRPTTPPQP TTAHPPSPSS
201: CVFSQPTTRD LEYGNIESEN NYFG
Arabidopsis Description
LBD15LOB domain-containing protein 15 [Source:UniProtKB/Swiss-Prot;Acc:Q8L5T5]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.