Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- nucleus 1
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU0Hr1G020290.1 | |
| HORVU4Hr1G063160.1 | nucleus |
| HORVU5Hr1G021230.1 | nucleus |
| HORVU5Hr1G112000.2 | nucleus |
| HORVU6Hr1G071420.2 | nucleus |
| HORVU7Hr1G046690.1 | |
| HORVU7Hr1G077530.1 | nucleus |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G259900.1 | Wheat | plastid | 91.73 | 96.96 |
| TraesCS1B01G270400.1 | Wheat | plastid | 91.73 | 96.96 |
| TraesCS1A01G260000.1 | Wheat | plastid | 91.73 | 96.59 |
| Os05t0417000-00 | Rice | plastid | 73.38 | 73.12 |
| OQU78015 | Sorghum | plastid | 68.35 | 61.69 |
| Solyc03g063140.2.1 | Tomato | nucleus, plastid | 37.05 | 59.2 |
| PGSC0003DMT400002549 | Potato | plastid | 37.05 | 54.5 |
| AT1G65620.1 | Thale cress | plastid | 38.85 | 54.27 |
| Bra039733.1-P | Field mustard | nucleus, plastid | 38.85 | 53.47 |
| CDY16414 | Canola | nucleus, plastid | 38.85 | 53.47 |
| CDY46781 | Canola | nucleus, plastid | 38.85 | 53.47 |
| HORVU3Hr1G090240.2 | Barley | plastid | 50.72 | 52.22 |
| HORVU3Hr1G090250.5 | Barley | plastid | 50.72 | 52.22 |
| VIT_00s0340g00090.t01 | Wine grape | nucleus | 38.85 | 50.0 |
| KRH20638 | Soybean | nucleus | 37.77 | 49.07 |
| KRH13283 | Soybean | nucleus | 37.41 | 49.06 |
| Solyc11g008830.1.1 | Tomato | plastid | 37.77 | 45.65 |
| KRG88909 | Soybean | nucleus | 32.73 | 42.52 |
| HORVU1Hr1G024490.1 | Barley | cytosol, mitochondrion, nucleus | 24.46 | 40.96 |
| HORVU5Hr1G047610.1 | Barley | plastid | 25.54 | 40.11 |
| HORVU4Hr1G002480.2 | Barley | cytosol | 24.1 | 37.64 |
| HORVU3Hr1G016690.1 | Barley | plastid | 33.45 | 33.57 |
| HORVU1Hr1G060290.2 | Barley | endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 27.34 | 32.62 |
| HORVU1Hr1G012720.1 | Barley | cytosol, plastid | 24.46 | 31.63 |
| HORVU4Hr1G056890.2 | Barley | plastid | 24.1 | 29.91 |
| HORVU4Hr1G013630.2 | Barley | nucleus | 31.65 | 29.24 |
| HORVU3Hr1G088440.1 | Barley | plastid | 22.66 | 19.09 |
Protein Annotations
| EnsemblPlants:HORVU1Hr1G064640.3 | EnsemblPlantsGene:HORVU1Hr1G064640 | InterPro:IPR004883 | InterPro:LOB | ncoils:Coil | PANTHER:PTHR31301 |
| PANTHER:PTHR31301:SF26 | PFAM:PF03195 | PFscan:PS50891 | SEG:seg | UniParc:UPI000B476621 | UniProt:A0A287FZC1 |
| MapMan:15.5.24 | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr1H:+:462585774..462589197
Molecular Weight (calculated)
28829.9 Da
IEP (calculated)
7.499
GRAVY (calculated)
-0.111
Length
278 amino acids
Sequence
(BLAST)
(BLAST)
001: AWDLDLLRQE ARPTHPSMAS SSASSFPGSV ITMASSAAAA GAASSGAAGT GSPCAACKFL RRKCQPDCVF APYFPPDNPQ KFVHVHRVFG ASNVTKLLNE
101: LNPYQREDAV NSLAYEADMR LRDPVYGCVG VISVLQHQLR QLQQDLARAR YELSKYQAAA AVAVSASVGC NGTPAMADFI GNTVPNCTQN FINISHSTAI
201: GAGLGFGHDQ FAAVQMLARS YEGEGAVARL GVNGGSGGGY DFGYTSGMGP VSGLGPLGGG PFLKHGTAGG DERHTAAQ
101: LNPYQREDAV NSLAYEADMR LRDPVYGCVG VISVLQHQLR QLQQDLARAR YELSKYQAAA AVAVSASVGC NGTPAMADFI GNTVPNCTQN FINISHSTAI
201: GAGLGFGHDQ FAAVQMLARS YEGEGAVARL GVNGGSGGGY DFGYTSGMGP VSGLGPLGGG PFLKHGTAGG DERHTAAQ
001: MASSSTNSPC AACKFLRRKC QPECVFAPYF PPDQPQKFAN VHKVFGASNV TKLLNELHPS QREDAVNSLA YEADMRLRDP VYGCVGVISL LQHQLRQLQI
101: DLSCAKSELS KYQSLGILAA THQSLGINLL AGAADGTATA VRDHYHHHQF FPREQMFGGL DVPAGNNYDG GILAIGQITQ FQQPRAAAGD DGRRTVDPS
101: DLSCAKSELS KYQSLGILAA THQSLGINLL AGAADGTATA VRDHYHHHQF FPREQMFGGL DVPAGNNYDG GILAIGQITQ FQQPRAAAGD DGRRTVDPS
Arabidopsis Description
AS2AS2 [Source:UniProtKB/TrEMBL;Acc:A0A178WIA0]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.