Factsheet for HORVU5Hr1G021230.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G014460.1
HORVU1Hr1G050960.7
HORVU1Hr1G064640.3
HORVU3Hr1G090240.2
HORVU3Hr1G090250.5
HORVU4Hr1G013630.2
HORVU4Hr1G067960.4
HORVU5Hr1G124010.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G37630.1	HORVU0Hr1G014460.1	AT1G32230.1	19548978
AT2G37630.1	HORVU1Hr1G050960.7	AT1G32230.1	19548978
AT2G37630.1	HORVU5Hr1G124010.1	AT1G32230.1	19548978
AT2G37630.1	HORVU1Hr1G064640.3	AT1G65620.1	19228338
AT2G37630.1	HORVU3Hr1G090240.2	AT1G65620.1	19228338
AT2G37630.1	HORVU3Hr1G090250.5	AT1G65620.1	19228338
AT2G37630.1	HORVU4Hr1G067960.4	AT3G29390.1	16243907
AT2G37630.1	HORVU4Hr1G013630.2	AT5G66870.1	16243907

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G079100.1	Wheat	nucleus	92.27	97.38
TraesCS5D01G093100.1	Wheat	mitochondrion, nucleus	96.96	97.23
TraesCS5B01G086900.1	Wheat	mitochondrion, nucleus	96.96	96.69
HORVU7Hr1G077530.1	Barley	mitochondrion, nucleus	43.09	93.98
Os12t0572000-01	Rice	nucleus	70.17	74.27
Zm00001d030737_P001	Maize	nucleus	73.2	71.62
EES17234	Sorghum	nucleus	73.48	69.82
GSMUA_Achr7P10550_001	Banana	nucleus	58.84	69.61
GSMUA_Achr9P28330_001	Banana	nucleus	58.01	65.22
VIT_08s0007g00410.t01	Wine grape	nucleus	63.81	64.53
KRG99949	Soybean	nucleus	61.88	62.75
KRH49100	Soybean	nucleus	61.88	62.05
HORVU5Hr1G112000.2	Barley	extracellular, nucleus	50.0	61.36
Solyc09g010840.1.1	Tomato	nucleus	59.94	60.28
PGSC0003DMT400022771	Potato	nucleus	59.94	60.11
Bra000011.1-P	Field mustard	nucleus	57.18	59.65
CDY07778	Canola	nucleus	57.18	59.65
KRG99521	Soybean	nucleus	57.18	58.81
GSMUA_Achr9P03320_001	Banana	nucleus	44.75	58.7
CDX91374	Canola	nucleus	57.73	58.54
KRH66092	Soybean	nucleus	57.46	58.26
CDX79747	Canola	nucleus	55.8	58.05
Bra005177.1-P	Field mustard	nucleus	56.63	56.79
AT2G37630.1	Thale cress	nucleus	57.46	56.68
CDX74943	Canola	nucleus	56.91	56.28
HORVU6Hr1G071420.2	Barley	plastid	26.8	52.72
GSMUA_Achr5P29070_001	Banana	nucleus	58.84	36.22
HORVU5Hr1G123880.1	Barley	nucleus	18.51	23.76
HORVU4Hr1G023510.2	Barley	nucleus	16.57	19.87
HORVU2Hr1G028470.1	Barley	nucleus, plastid	13.26	19.05
HORVU5Hr1G045540.1	Barley	nucleus	17.13	18.96
HORVU5Hr1G045550.1	Barley	nucleus	17.13	17.13

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	EMBL:AK372839	EMBL:AK372889	ncoils:Coil	UniProt:F2E9L4
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009653	GO:GO:0009987	GO:GO:0010338	EnsemblPlantsGene:HORVU5Hr1G021230
EnsemblPlants:HORVU5Hr1G021230.1	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	PFAM:PF13921	PFscan:PS51294
PANTHER:PTHR10641	PANTHER:PTHR10641:SF457	InterPro:RS2/AS1	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689
UniParc:UPI00020081FC	SEG:seg	:	:	:	:

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2E9L4]

Coordinates

chrchr5H:-:101848773..101852564

Molecular Weight (calculated)

41528.5 Da

IEP (calculated)

9.970

GRAVY (calculated)

-0.889

Length

362 amino acids

Sequence
(BLAST)

001: MEMKERQRWR PEEDAILRSY VRQYGPREWN LVAQRMNAPL DRDAKSCLER WKNYLRPGIK KGSLTDDEQR LVIRLQAKHG NKWKKIAAEV PGRTAKRLGK
101: WWEVFKEKQQ REIRDSRRPP PEPSPDERGR YEWLLENFAE KLVKERQQVG ATPLHHHLMA APMLPPWMSS TATNGAPVSN APPSPSVTLS LASAVAAPPA
201: GAPWMQQQQQ MVEDGAAGFG FARPPPAPGM VADAPQAALA ELAECCRELD EGHRAWAAHR KEASWRLKRV ELQLESERAC RRREAAEEFE AKMRALWEEQ
301: AAAVERLEAE YREKVAGLRR DAELKEQKMA EQWATKHARL TKFLEQVGSS CRRWPPGEMN GR

Best Arabidopsis Sequence Match ( AT2G37630.1 )
(BLAST)

001: MKERQRWSGE EDALLRAYVR QFGPREWHLV SERMNKPLNR DAKSCLERWK NYLKPGIKKG SLTEEEQRLV IRLQEKHGNK WKKIAAEVPG RTAKRLGKWW
101: EVFKEKQQRE EKESNKRVEP IDESKYDRIL ESFAEKLVKE RSNVVPAAAA AATVVMANSN GGFLHSEQQV QPPNPVIPPW LATSNNGNNV VARPPSVTLT
201: LSPSTVAAAA PQPPIPWLQQ QQPERAENGP GGLVLGSMMP SCSGSSESVF LSELVECCRE LEEGHRAWAD HKKEAAWRLR RLELQLESEK TCRQREKMEE
301: IEAKMKALRE EQKNAMEKIE GEYREQLVGL RRDAEAKDQK LADQWTSRHI RLTKFLEQQM GCRLDRP

Arabidopsis Description

AS1Transcription factor AS1 [Source:UniProtKB/Swiss-Prot;Acc:O80931]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.