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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:
  • cytosol 1
  • mitochondrion 1
  • nucleus 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS1D01G113100.1 Wheat nucleus 97.59 68.94
TraesCS1A01G111700.1 Wheat nucleus 98.19 68.78
TraesCS1B01G131900.2 Wheat nucleus 97.59 68.35
GSMUA_AchrUn_... Banana plastid 57.83 52.17
Os05t0165450-00 Rice extracellular 77.71 52.02
GSMUA_Achr7P22200_001 Banana nucleus 65.06 51.18
Zm00001d009823_P001 Maize plastid 67.47 51.14
GSMUA_Achr5P07460_001 Banana nucleus 63.86 50.72
GSMUA_Achr11P... Banana cytosol 64.46 49.31
VIT_13s0067g02380.t01 Wine grape nucleus 65.06 48.21
KRH64170 Soybean nucleus 63.86 47.75
KRH53776 Soybean nucleus 63.86 47.75
Solyc06g050430.2.1 Tomato nucleus 62.05 47.47
VIT_06s0004g07790.t01 Wine grape cytosol 63.25 45.85
PGSC0003DMT400078265 Potato cytosol, nucleus, plastid 59.04 44.14
PGSC0003DMT400052995 Potato plastid 53.01 43.78
OQU77508 Sorghum cytosol, nucleus, plastid 80.12 43.32
Solyc06g082430.1.1 Tomato cytosol, nucleus, plastid 60.24 43.1
Solyc06g007390.2.1 Tomato nucleus 59.64 41.6
Bra018320.1-P Field mustard mitochondrion 57.83 40.68
CDY02059 Canola mitochondrion 57.83 40.68
CDY10726 Canola mitochondrion 57.83 40.68
KRH17149 Soybean cytosol, mitochondrion, nucleus 59.64 39.76
KRH72805 Soybean cytosol, mitochondrion, nucleus 59.04 38.74
HORVU5Hr1G047610.1 Barley plastid 40.96 38.42
HORVU4Hr1G002480.2 Barley cytosol 40.36 37.64
AT2G30340.2 Thale cress nucleus 60.24 37.17
PGSC0003DMT400074783 Potato mitochondrion 57.23 34.67
HORVU3Hr1G088440.1 Barley plastid 65.06 32.73
HORVU1Hr1G060290.2 Barley endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole 43.98 31.33
HORVU1Hr1G012720.1 Barley cytosol, plastid 37.35 28.84
HORVU4Hr1G056890.2 Barley plastid 36.14 26.79
HORVU1Hr1G064640.3 Barley plastid 40.96 24.46
HORVU3Hr1G090250.5 Barley plastid 37.95 23.33
HORVU3Hr1G090240.2 Barley plastid 37.95 23.33
HORVU3Hr1G016690.1 Barley plastid 38.55 23.1
HORVU4Hr1G013630.2 Barley nucleus 37.95 20.93
Protein Annotations
EnsemblPlants:HORVU1Hr1G024490.1EnsemblPlantsGene:HORVU1Hr1G024490InterPro:IPR004883InterPro:LOBncoils:CoilPANTHER:PTHR31301
PANTHER:PTHR31301:SF28PFAM:PF03195PFscan:PS50891SEG:segUniParc:UPI000B4894FCUniProt:A0A287EY42
MapMan:15.5.24:::::
Description
No Description!
Coordinates
chrchr1H:+:113482829..113484314
Molecular Weight (calculated)
18057.6 Da
IEP (calculated)
8.763
GRAVY (calculated)
-0.275
Length
166 amino acids
Sequence
(BLAST)
001: MSTASDWQQD HEVGKKIKSE STAEADRMMA AARRSSSLPA AGAGPASTPS FNTMTPCAAC KLLRRRCAQE CPFSPFFSPL EPHKFASVHK VFGASNVSKM
101: LLEVHESQRG DAANSLVYEA NLRLRDPVYG CMGAILTLQQ QVHALEAELA AVRAEILKHR YRPAAA
Best Arabidopsis Sequence Match ( AT2G30340.2 )
(BLAST)
001: MIGNNREGFG EYYETVKKIK KDPAFETTTD HAVMGIRRHV AVPPGTTLNT VTPCAACKLL RRRCAEECPF SPYFSPHEPH KFAAVHKVFG ASNVSKMLLE
101: VGESQRGDAA NSLVYEANLR LRDPIYGCMG AISALQHHIQ SLQSELTTVR TEILRHKYQE ATTITSLQNN FNSTTTTSSV SCDQHALASA ILLPPPPPPP
201: PTPRPPRLLS SQPAPPPTPP VSLPSPSMVV SSSSSSNSSA TNSMYNPPPS STAGYSNSLS SDNNVHYFD
Arabidopsis Description
LBD13LBD13 [Source:UniProtKB/TrEMBL;Acc:A0A178VRU4]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.