Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 1
Predictors | GFP | MS/MS | Papers | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS1D01G113100.1 | Wheat | nucleus | 97.59 | 68.94 |
TraesCS1A01G111700.1 | Wheat | nucleus | 98.19 | 68.78 |
TraesCS1B01G131900.2 | Wheat | nucleus | 97.59 | 68.35 |
GSMUA_AchrUn_... | Banana | plastid | 57.83 | 52.17 |
Os05t0165450-00 | Rice | extracellular | 77.71 | 52.02 |
GSMUA_Achr7P22200_001 | Banana | nucleus | 65.06 | 51.18 |
Zm00001d009823_P001 | Maize | plastid | 67.47 | 51.14 |
GSMUA_Achr5P07460_001 | Banana | nucleus | 63.86 | 50.72 |
GSMUA_Achr11P... | Banana | cytosol | 64.46 | 49.31 |
VIT_13s0067g02380.t01 | Wine grape | nucleus | 65.06 | 48.21 |
KRH64170 | Soybean | nucleus | 63.86 | 47.75 |
KRH53776 | Soybean | nucleus | 63.86 | 47.75 |
Solyc06g050430.2.1 | Tomato | nucleus | 62.05 | 47.47 |
VIT_06s0004g07790.t01 | Wine grape | cytosol | 63.25 | 45.85 |
PGSC0003DMT400078265 | Potato | cytosol, nucleus, plastid | 59.04 | 44.14 |
PGSC0003DMT400052995 | Potato | plastid | 53.01 | 43.78 |
OQU77508 | Sorghum | cytosol, nucleus, plastid | 80.12 | 43.32 |
Solyc06g082430.1.1 | Tomato | cytosol, nucleus, plastid | 60.24 | 43.1 |
Solyc06g007390.2.1 | Tomato | nucleus | 59.64 | 41.6 |
Bra018320.1-P | Field mustard | mitochondrion | 57.83 | 40.68 |
CDY02059 | Canola | mitochondrion | 57.83 | 40.68 |
CDY10726 | Canola | mitochondrion | 57.83 | 40.68 |
KRH17149 | Soybean | cytosol, mitochondrion, nucleus | 59.64 | 39.76 |
KRH72805 | Soybean | cytosol, mitochondrion, nucleus | 59.04 | 38.74 |
HORVU5Hr1G047610.1 | Barley | plastid | 40.96 | 38.42 |
HORVU4Hr1G002480.2 | Barley | cytosol | 40.36 | 37.64 |
AT2G30340.2 | Thale cress | nucleus | 60.24 | 37.17 |
PGSC0003DMT400074783 | Potato | mitochondrion | 57.23 | 34.67 |
HORVU3Hr1G088440.1 | Barley | plastid | 65.06 | 32.73 |
HORVU1Hr1G060290.2 | Barley | endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 43.98 | 31.33 |
HORVU1Hr1G012720.1 | Barley | cytosol, plastid | 37.35 | 28.84 |
HORVU4Hr1G056890.2 | Barley | plastid | 36.14 | 26.79 |
HORVU1Hr1G064640.3 | Barley | plastid | 40.96 | 24.46 |
HORVU3Hr1G090250.5 | Barley | plastid | 37.95 | 23.33 |
HORVU3Hr1G090240.2 | Barley | plastid | 37.95 | 23.33 |
HORVU3Hr1G016690.1 | Barley | plastid | 38.55 | 23.1 |
HORVU4Hr1G013630.2 | Barley | nucleus | 37.95 | 20.93 |
Protein Annotations
EnsemblPlants:HORVU1Hr1G024490.1 | EnsemblPlantsGene:HORVU1Hr1G024490 | InterPro:IPR004883 | InterPro:LOB | ncoils:Coil | PANTHER:PTHR31301 |
PANTHER:PTHR31301:SF28 | PFAM:PF03195 | PFscan:PS50891 | SEG:seg | UniParc:UPI000B4894FC | UniProt:A0A287EY42 |
MapMan:15.5.24 | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr1H:+:113482829..113484314
Molecular Weight (calculated)
18057.6 Da
IEP (calculated)
8.763
GRAVY (calculated)
-0.275
Length
166 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTASDWQQD HEVGKKIKSE STAEADRMMA AARRSSSLPA AGAGPASTPS FNTMTPCAAC KLLRRRCAQE CPFSPFFSPL EPHKFASVHK VFGASNVSKM
101: LLEVHESQRG DAANSLVYEA NLRLRDPVYG CMGAILTLQQ QVHALEAELA AVRAEILKHR YRPAAA
101: LLEVHESQRG DAANSLVYEA NLRLRDPVYG CMGAILTLQQ QVHALEAELA AVRAEILKHR YRPAAA
001: MIGNNREGFG EYYETVKKIK KDPAFETTTD HAVMGIRRHV AVPPGTTLNT VTPCAACKLL RRRCAEECPF SPYFSPHEPH KFAAVHKVFG ASNVSKMLLE
101: VGESQRGDAA NSLVYEANLR LRDPIYGCMG AISALQHHIQ SLQSELTTVR TEILRHKYQE ATTITSLQNN FNSTTTTSSV SCDQHALASA ILLPPPPPPP
201: PTPRPPRLLS SQPAPPPTPP VSLPSPSMVV SSSSSSNSSA TNSMYNPPPS STAGYSNSLS SDNNVHYFD
101: VGESQRGDAA NSLVYEANLR LRDPIYGCMG AISALQHHIQ SLQSELTTVR TEILRHKYQE ATTITSLQNN FNSTTTTSSV SCDQHALASA ILLPPPPPPP
201: PTPRPPRLLS SQPAPPPTPP VSLPSPSMVV SSSSSSNSSA TNSMYNPPPS STAGYSNSLS SDNNVHYFD
Arabidopsis Description
LBD13LBD13 [Source:UniProtKB/TrEMBL;Acc:A0A178VRU4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.