Factsheet for TraesCS1A01G111700.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G024490.1	Barley	cytosol, mitochondrion, nucleus	68.78	98.19
TraesCS1B01G131900.2	Wheat	nucleus	97.89	97.89
TraesCS1D01G113100.1	Wheat	nucleus	95.78	96.6
Zm00001d009823_P001	Maize	plastid	66.24	71.69
GSMUA_AchrUn_...	Banana	plastid	53.16	68.48
Os05t0165450-00	Rice	extracellular	70.46	67.34
GSMUA_Achr5P07460_001	Banana	nucleus	57.38	65.07
GSMUA_Achr11P...	Banana	cytosol	54.01	58.99
VIT_13s0067g02380.t01	Wine grape	nucleus	55.7	58.93
OQU77508	Sorghum	cytosol, nucleus, plastid	75.95	58.63
GSMUA_Achr7P22200_001	Banana	nucleus	51.9	58.29
KRH53776	Soybean	nucleus	52.32	55.86
KRH64170	Soybean	nucleus	51.48	54.95
Solyc06g050430.2.1	Tomato	nucleus	49.37	53.92
VIT_06s0004g07790.t01	Wine grape	cytosol	51.9	53.71
PGSC0003DMT400078265	Potato	cytosol, nucleus, plastid	48.1	51.35
PGSC0003DMT400052995	Potato	plastid	42.62	50.25
Solyc06g082430.1.1	Tomato	cytosol, nucleus, plastid	48.95	50.0
TraesCS3A01G346300.1	Wheat	cytosol	51.9	49.2
Solyc06g007390.2.1	Tomato	nucleus	48.52	48.32
CDY10726	Canola	mitochondrion	47.68	47.88
CDY02059	Canola	mitochondrion	47.68	47.88
Bra018320.1-P	Field mustard	mitochondrion	47.68	47.88
KRH17149	Soybean	cytosol, mitochondrion, nucleus	48.52	46.18
KRH72805	Soybean	cytosol, mitochondrion, nucleus	48.95	45.85
AT2G30340.2	Thale cress	nucleus	49.79	43.87
TraesCS4A01G297500.1	Wheat	plastid	30.38	41.62
TraesCS1A01G222300.1	Wheat	mitochondrion	32.49	40.74
TraesCS5A01G152200.1	Wheat	plastid	30.38	40.68
PGSC0003DMT400074783	Potato	mitochondrion	46.84	40.51
TraesCS1A01G062200.1	Wheat	cytosol, plastid	27.0	31.07
TraesCS4A01G107300.1	Wheat	plastid	25.74	27.35
TraesCS3A01G093200.1	Wheat	plastid	29.11	26.85
TraesCS3A01G402300.1	Wheat	plastid	29.11	26.64
TraesCS1A01G260000.1	Wheat	plastid	29.54	26.52
TraesCS4A01G235100.1	Wheat	nucleus	28.27	23.26

Protein Annotations

EnsemblPlants:TraesCS1A01G111700.1	EnsemblPlantsGene:TraesCS1A01G111700	InterPro:IPR004883	InterPro:LOB	ncoils:Coil	PANTHER:PTHR31301
PANTHER:PTHR31301:SF28	PFAM:PF03195	PFscan:PS50891	SEG:seg	MapMan:15.5.24	:

Description

No Description!

Coordinates

chr1A:-:112942671..112944251

Molecular Weight (calculated)

24745.2 Da

IEP (calculated)

8.744

GRAVY (calculated)

-0.118

Length

237 amino acids

Sequence
(BLAST)

001: MSTASDWQQD HEVGKKIKSE SAAEADRMMA AARRSSSLPA AGAGPGSTPS FNTMTPCAAC KLLRRRCAQE CPFSPFFSPL EPHKFASVHK VFGASNVSKM
101: LLEVHESQRG DAANSLVYEA NLRLRDPVYG CMGAILTLQQ QVHALEAELA AVRAQILKHR YRPAAAAAAS AVPNVPPSSH ASQLLAAGGH RPAGSLGLAA
201: PAVGPVASAS SSTTVYAAAS SSTDYSSITH ENVPFFG

Best Arabidopsis Sequence Match ( AT2G30340.2 )
(BLAST)

001: MIGNNREGFG EYYETVKKIK KDPAFETTTD HAVMGIRRHV AVPPGTTLNT VTPCAACKLL RRRCAEECPF SPYFSPHEPH KFAAVHKVFG ASNVSKMLLE
101: VGESQRGDAA NSLVYEANLR LRDPIYGCMG AISALQHHIQ SLQSELTTVR TEILRHKYQE ATTITSLQNN FNSTTTTSSV SCDQHALASA ILLPPPPPPP
201: PTPRPPRLLS SQPAPPPTPP VSLPSPSMVV SSSSSSNSSA TNSMYNPPPS STAGYSNSLS SDNNVHYFD

Arabidopsis Description

LBD13LBD13 [Source:UniProtKB/TrEMBL;Acc:A0A178VRU4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.