Factsheet for TraesCS1A01G062200.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G012720.1	Barley	cytosol, plastid	97.57	93.49
TraesCS1B01G080600.1	Wheat	cytosol, plastid	96.6	92.56
TraesCS2D01G008400.1	Wheat	plastid	96.12	92.09
Zm00001d035498_P001	Maize	plastid	70.87	66.06
EES18939	Sorghum	plastid	69.9	65.75
Zm00001d010978_P001	Maize	plastid	65.05	63.21
KRH10407	Soybean	mitochondrion	48.06	57.56
Solyc11g072470.1.1	Tomato	plastid	52.43	57.14
VIT_06s0004g03330.t01	Wine grape	nucleus, plastid	54.85	55.94
GSMUA_Achr8P09700_001	Banana	cytosol	55.34	55.88
GSMUA_Achr7P15500_001	Banana	nucleus	52.91	55.61
Solyc06g005090.2.1	Tomato	plastid	52.91	55.05
VIT_13s0019g03700.t01	Wine grape	plastid	51.94	54.31
GSMUA_Achr4P16790_001	Banana	plastid	50.0	54.21
VIT_06s0004g03350.t01	Wine grape	plastid	53.4	53.92
AT1G07900.1	Thale cress	plastid	49.03	53.16
PGSC0003DMT400065346	Potato	plastid	53.88	53.11
KRH24932	Soybean	nucleus, plastid	51.46	52.48
KRH22937	Soybean	plastid	50.0	52.02
KRG89044	Soybean	nucleus, plastid	51.46	51.96
CDY22713	Canola	plastid	46.12	49.74
CDY06285	Canola	nucleus, plastid	45.63	49.47
KRG91848	Soybean	plastid	52.43	48.65
Bra018675.1-P	Field mustard	plastid	48.54	48.54
KRH34918	Soybean	plastid	51.94	48.2
GSMUA_Achr10P...	Banana	plastid	56.31	46.4
TraesCS5A01G152200.1	Wheat	plastid	39.81	46.33
CDX77182	Canola	plastid	48.54	46.08
CDY62454	Canola	plastid	48.54	46.08
PGSC0003DMT400065297	Potato	plastid	48.06	45.83
CDY31207	Canola	plastid	48.06	45.83
CDY15755	Canola	plastid	48.06	45.62
CDY04570	Canola	plastid	48.06	45.41
Bra031599.1-P	Field mustard	nucleus, plastid	45.63	45.41
TraesCS4A01G107300.1	Wheat	plastid	48.54	44.84
AT2G28500.1	Thale cress	plastid	50.0	44.4
Bra035698.1-P	Field mustard	plastid	49.03	44.1
CDX93609	Canola	nucleus	48.06	44.0
CDX95115	Canola	plastid	48.54	43.86
CDX83290	Canola	plastid	49.03	43.72
Bra000491.1-P	Field mustard	plastid	49.03	43.72
Bra011942.1-P	Field mustard	plastid	48.54	42.92
TraesCS4A01G297500.1	Wheat	plastid	35.92	42.77
GSMUA_Achr3P17800_001	Banana	mitochondrion, plastid	48.54	42.73
TraesCS1A01G222300.1	Wheat	mitochondrion	35.92	39.15
TraesCS3A01G346300.1	Wheat	cytosol	34.47	28.4
TraesCS3A01G093200.1	Wheat	plastid	34.47	27.63
TraesCS1A01G111700.1	Wheat	nucleus	31.07	27.0
TraesCS3A01G402300.1	Wheat	plastid	32.04	25.48
TraesCS1A01G260000.1	Wheat	plastid	32.52	25.38
TraesCS4A01G235100.1	Wheat	nucleus	32.04	22.92

Protein Annotations

EnsemblPlants:TraesCS1A01G062200.1	EnsemblPlantsGene:TraesCS1A01G062200	InterPro:IPR004883	InterPro:LOB	ncoils:Coil	PANTHER:PTHR31301
PANTHER:PTHR31301:SF14	PFAM:PF03195	PFscan:PS50891	SEG:seg	MapMan:15.5.24	:

Description

No Description!

Coordinates

chr1A:-:42603254..42603901

Molecular Weight (calculated)

21207.2 Da

IEP (calculated)

6.701

GRAVY (calculated)

0.037

Length

206 amino acids

Sequence
(BLAST)

001: MESSGDTAPL HSSPTPTSPP AMATGAAVVM SPCAACKILR RRCVDRCVLA PYFPPTDPHK FATAHRVFGA SNIIKLLQDL PEEQRADAVS SMVYEAAARA
101: RDPVYGSAGA ICQLQRQVDG LKAQLARAQA ELAAARAHHA HLVALLCVEV DAYCTGGGGS QTQLAAPPGV GSAHADALYV VDGGAAGGGG IMQAGHVGWA
201: DEPLWT

Best Arabidopsis Sequence Match ( AT2G28500.1 )
(BLAST)

001: MLKMEINGGV ATPTASAVAK VTETTTPVNS PSPTSSPPPP PSPQQPPQPP VVLSPCAACK ILRRRCADKC VLAPYFPPTD PAKFTIAHRV FGASNIIKFL
101: QELPESQRTD AVNSMVYEAG ARMRDPVYGC AGAIYHLQRQ VSELQAQLAK TQVELVGMQL QRSSLLELIY NMEQTKLSVQ EQGQQKMSFE SSFESGDEFI
201: SSPDEESNDL GFLEDNNNNN NSSMSWWDPL WT

Arabidopsis Description

LBD11LOB domain-containing protein 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9SK08]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.