CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83290	Canola	plastid	97.22	90.91
CDY62454	Canola	plastid	83.8	83.41
CDX77182	Canola	plastid	83.33	82.95
CDY15755	Canola	plastid	81.94	81.57
CDY04570	Canola	plastid	80.09	79.36
AT2G28500.1	Thale cress	plastid	81.94	76.29
CDY22713	Canola	plastid	63.89	72.25
CDY06285	Canola	nucleus, plastid	61.57	70.0
CDX93609	Canola	nucleus	66.2	63.56
KRH10407	Soybean	mitochondrion	50.0	62.79
CDX95115	Canola	plastid	65.74	62.28
Solyc11g072470.1.1	Tomato	plastid	52.78	60.32
Solyc04g050010.1.1	Tomato	cytosol	45.37	59.39
VIT_06s0004g03330.t01	Wine grape	nucleus, plastid	55.09	58.91
KRG89044	Soybean	nucleus, plastid	55.56	58.82
Solyc06g005090.2.1	Tomato	plastid	53.7	58.59
KRH24932	Soybean	nucleus, plastid	54.63	58.42
KRH22937	Soybean	plastid	53.24	58.08
VIT_13s0019g03700.t01	Wine grape	plastid	52.78	57.87
VIT_06s0004g03350.t01	Wine grape	plastid	54.17	57.35
PGSC0003DMT400019410	Potato	plastid	51.85	56.57
PGSC0003DMT400010597	Potato	cytosol, nucleus, plastid	44.91	56.07
PGSC0003DMT400065346	Potato	plastid	53.24	55.02
CDY72536	Canola	mitochondrion	34.72	54.35
CDY51008	Canola	mitochondrion	34.26	53.24
KRG91848	Soybean	plastid	54.17	52.7
KRH34918	Soybean	plastid	54.17	52.7
Solyc05g048740.2.1	Tomato	nucleus, plastid	52.31	52.56
GSMUA_Achr6P33070_001	Banana	plastid	46.76	51.53
CDY03987	Canola	plastid	30.56	50.0
CDY49773	Canola	plastid	30.09	49.24
CDX83724	Canola	plastid	30.09	49.24
CDY13730	Canola	plastid	30.09	49.24
PGSC0003DMT400065297	Potato	plastid	49.07	49.07
CDY20041	Canola	plastid	29.63	48.85
GSMUA_Achr9P04330_001	Banana	plastid	39.81	48.31
TraesCS1A01G062200.1	Wheat	cytosol, plastid	45.83	48.06
Zm00001d035498_P001	Maize	plastid	47.69	46.61
TraesCS1B01G080600.1	Wheat	cytosol, plastid	46.3	46.51
HORVU1Hr1G012720.1	Barley	cytosol, plastid	46.3	46.51
TraesCS2D01G008400.1	Wheat	plastid	46.3	46.51
Zm00001d010978_P001	Maize	plastid	44.91	45.75
EES18939	Sorghum	plastid	46.3	45.66
EER92422	Sorghum	plastid	49.07	45.11
TraesCS4D01G197400.1	Wheat	plastid	45.83	44.39
Zm00001d047752_P001	Maize	plastid	49.07	44.35
HORVU4Hr1G056890.2	Barley	plastid	45.83	44.2
TraesCS4B01G197100.1	Wheat	plastid	45.37	43.95
Zm00001d028721_P001	Maize	plastid	47.22	43.4
TraesCS4A01G107300.1	Wheat	plastid	44.44	43.05
CDY66794	Canola	mitochondrion	31.94	42.33
CDY40054	Canola	mitochondrion	31.94	42.33
Os03t0287400-01	Rice	plastid	46.76	42.26
CDX81767	Canola	cytosol, nucleus, plastid	31.94	42.07
CDX77553	Canola	cytosol, mitochondrion, nucleus, plastid	33.33	41.86
CDY50718	Canola	cytosol, mitochondrion, nucleus, plastid	32.87	41.28
CDY24027	Canola	mitochondrion	34.72	39.89
Solyc06g075330.1.1	Tomato	golgi, nucleus, plastid	44.44	39.67
CDY50999	Canola	cytosol, mitochondrion, plastid	30.09	39.63
CDY10714	Canola	mitochondrion	34.26	39.15
CDY48125	Canola	plastid	31.02	38.07
CDY16738	Canola	plastid	31.02	38.07
CDY68853	Canola	plastid	31.02	37.02
CDY69697	Canola	plastid	30.56	36.46
CDY67958	Canola	plastid	29.63	32.32
CDY23903	Canola	plastid	29.63	32.32
CDY16414	Canola	nucleus, plastid	30.09	32.18
CDY46781	Canola	nucleus, plastid	30.09	32.18
CDY06988	Canola	plastid	29.63	31.84
CDX93178	Canola	cytosol, nucleus, plastid	30.56	29.07
CDY24903	Canola	mitochondrion	30.09	28.14
CDY07604	Canola	mitochondrion	30.09	28.02
CDY10726	Canola	mitochondrion	28.7	26.27
CDY02059	Canola	mitochondrion	28.7	26.27
CDX89590	Canola	mitochondrion, nucleus	30.09	21.1
CDX68120	Canola	mitochondrion, nucleus	30.09	21.1
CDY52150	Canola	nucleus, plastid	29.63	20.25
CDY49845	Canola	nucleus, plastid	29.17	20.19
CDY12784	Canola	nucleus, plastid	29.63	19.05
CDY01457	Canola	nucleus, plastid	29.63	18.93
CDY18621	Canola	nucleus, plastid	25.0	17.82
CDX81360	Canola	plastid	25.93	16.72

Protein Annotations

EnsemblPlants:CDY31207	EnsemblPlantsGene:GSBRNA2T00047337001	InterPro:IPR004883	InterPro:LOB	PANTHER:PTHR31301	PANTHER:PTHR31301:SF6
PFAM:PF03195	PFscan:PS50891	ProteinID:CDY31207	ProteinID:CDY31207.1	SEG:seg	UniParc:UPI0004EF3E1D
UniProt:A0A078H144	MapMan:15.5.24	:	:	:	:

Description

BnaC03g46840DBnaC03g46840D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H144]

Coordinates

chrLK032268:-:462590..464154

Molecular Weight (calculated)

23849.4 Da

IEP (calculated)

5.270

GRAVY (calculated)

-0.343

Length

216 amino acids

Sequence
(BLAST)

001: MLKMETFGGI SVAAPTSSAV EKTTTPANSA SPTSSPPPPL SPEQPQQQTV VLSPCAACKI LRRRCAEKCV LAPYFPPTDP AKFIIAHRVF GASNIIKFLQ
101: ELPESQRTDT VNSMVYEAGA RMRDPVYGCA GAIYHLQRQV CELQAQLAKT QVDLVSMQLQ RSDLLELLHK TEQANLSEQQ EGQQNMSFEM TNDLGFLDCN
201: NNNNNSSMLW SDPLWT

Best Arabidopsis Sequence Match ( AT1G07900.1 )
(BLAST)

001: MESKSDASVA TTPIISSSSS PPPSLSPRVV LSPCAACKIL RRRCAERCVL APYFPPTDPA KFTIAHRVFG ASNIIKFLQE LPESQRTDAV NSMVYEAEAR
101: IRDPVYGCAG AIYHLQRQVS ELQAQLAKAQ VEMVNMQFQR SNLLELIYNM DQQQKQEQDN MSFESNDLGF LEDKSNTNSS MLWWDPLWTC

Arabidopsis Description

LBD1LBD1 [Source:UniProtKB/TrEMBL;Acc:A0A178WM56]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.