CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06285	Canola	nucleus, plastid	96.86	97.37
AT1G07900.1	Thale cress	plastid	78.53	78.95
CDX93609	Canola	nucleus	84.82	72.0
CDX95115	Canola	plastid	83.25	69.74
CDY62454	Canola	plastid	74.35	65.44
CDX77182	Canola	plastid	73.82	64.98
CDY31207	Canola	plastid	72.25	63.89
CDY15755	Canola	plastid	71.73	63.13
Solyc04g050010.1.1	Tomato	cytosol	53.93	62.42
CDY04570	Canola	plastid	70.68	61.93
KRH10407	Soybean	mitochondrion	54.97	61.05
CDX83290	Canola	plastid	72.25	59.74
PGSC0003DMT400010597	Potato	cytosol, nucleus, plastid	53.4	58.96
VIT_13s0019g03700.t01	Wine grape	plastid	59.16	57.36
Solyc11g072470.1.1	Tomato	plastid	56.54	57.14
KRH24932	Soybean	nucleus, plastid	60.21	56.93
KRH22937	Soybean	plastid	58.64	56.57
KRG89044	Soybean	nucleus, plastid	59.69	55.88
VIT_06s0004g03330.t01	Wine grape	nucleus, plastid	58.64	55.45
CDY72536	Canola	mitochondrion	39.27	54.35
CDY51008	Canola	mitochondrion	39.27	53.96
VIT_06s0004g03350.t01	Wine grape	plastid	57.59	53.92
GSMUA_Achr6P33070_001	Banana	plastid	54.97	53.57
Solyc06g005090.2.1	Tomato	plastid	54.97	53.03
Solyc05g048740.2.1	Tomato	nucleus, plastid	59.16	52.56
KRG91848	Soybean	plastid	59.16	50.9
KRH34918	Soybean	plastid	59.16	50.9
CDY13730	Canola	plastid	35.08	50.76
CDX83724	Canola	plastid	35.08	50.76
PGSC0003DMT400019410	Potato	plastid	51.83	50.0
PGSC0003DMT400065346	Potato	plastid	53.93	49.28
CDY20041	Canola	plastid	33.51	48.85
CDY03987	Canola	plastid	33.51	48.48
GSMUA_Achr9P04330_001	Banana	plastid	44.5	47.75
CDY49773	Canola	plastid	32.98	47.73
TraesCS1A01G062200.1	Wheat	cytosol, plastid	49.74	46.12
PGSC0003DMT400065297	Potato	plastid	51.83	45.83
Zm00001d035498_P001	Maize	plastid	51.83	44.8
TraesCS1B01G080600.1	Wheat	cytosol, plastid	49.74	44.19
TraesCS2D01G008400.1	Wheat	plastid	49.74	44.19
HORVU1Hr1G012720.1	Barley	cytosol, plastid	49.74	44.19
Zm00001d010978_P001	Maize	plastid	48.69	43.87
EES18939	Sorghum	plastid	50.26	43.84
EER92422	Sorghum	plastid	52.36	42.55
TraesCS4D01G197400.1	Wheat	plastid	49.21	42.15
TraesCS4B01G197100.1	Wheat	plastid	49.21	42.15
CDX81767	Canola	cytosol, nucleus, plastid	36.13	42.07
HORVU4Hr1G056890.2	Barley	plastid	49.21	41.96
CDX77553	Canola	cytosol, mitochondrion, nucleus, plastid	37.7	41.86
CDY66794	Canola	mitochondrion	35.6	41.72
CDY40054	Canola	mitochondrion	35.6	41.72
Zm00001d028721_P001	Maize	plastid	51.31	41.7
Zm00001d047752_P001	Maize	plastid	51.83	41.42
CDY50718	Canola	cytosol, mitochondrion, nucleus, plastid	37.17	41.28
TraesCS4A01G107300.1	Wheat	plastid	48.17	41.26
CDY24027	Canola	mitochondrion	39.27	39.89
CDY10714	Canola	mitochondrion	39.27	39.68
CDY50999	Canola	cytosol, mitochondrion, plastid	34.03	39.63
Os03t0287400-01	Rice	plastid	49.21	39.33
CDY16738	Canola	plastid	36.13	39.2
CDY48125	Canola	plastid	36.13	39.2
CDY68853	Canola	plastid	36.13	38.12
CDY69697	Canola	plastid	36.13	38.12
Solyc06g075330.1.1	Tomato	golgi, nucleus, plastid	45.03	35.54
CDY23903	Canola	plastid	34.55	33.33
CDY67958	Canola	plastid	34.55	33.33
CDY46781	Canola	nucleus, plastid	35.08	33.17
CDY16414	Canola	nucleus, plastid	35.08	33.17
CDY06988	Canola	plastid	34.55	32.84
CDX93178	Canola	cytosol, nucleus, plastid	35.6	29.96
CDY24903	Canola	mitochondrion	35.08	29.0
CDY07604	Canola	mitochondrion	34.55	28.45
CDY10726	Canola	mitochondrion	31.41	25.42
CDY02059	Canola	mitochondrion	31.41	25.42
CDX89590	Canola	mitochondrion, nucleus	37.17	23.05
CDX68120	Canola	mitochondrion, nucleus	37.17	23.05
CDY52150	Canola	nucleus, plastid	35.6	21.52
CDY49845	Canola	nucleus, plastid	35.08	21.47
CDY12784	Canola	nucleus, plastid	36.13	20.54
CDY01457	Canola	nucleus, plastid	36.13	20.41
CDY18621	Canola	nucleus, plastid	31.41	19.8
CDX81360	Canola	plastid	32.46	18.51

Protein Annotations

EnsemblPlants:CDY22713	EnsemblPlantsGene:GSBRNA2T00019386001	InterPro:IPR004883	InterPro:LOB	ncoils:Coil	PANTHER:PTHR31301
PANTHER:PTHR31301:SF6	PFAM:PF03195	PFscan:PS50891	ProteinID:CDY22713	ProteinID:CDY22713.1	SEG:seg
UniParc:UPI0004EF0D88	UniProt:A0A078GDJ4	MapMan:15.5.24	:	:	:

Description

BnaC08g43470DBnaC08g43470D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GDJ4]

Coordinates

chrLK032134:-:614456..615570

Molecular Weight (calculated)

21385.8 Da

IEP (calculated)

5.819

GRAVY (calculated)

-0.202

Length

191 amino acids

Sequence
(BLAST)

001: MLDMETKGDA SAAIIYASPA SSPPPPRVVL SPCAACKILR RRCGEKCVLA PYFPPTEPAK FSIAHRVFGA SNIIKLLQEL PESQRTDAVK SLVYEAEARI
101: RDPVYGSAGA IYNLQRQVSE LQAELAKAQV EIVSMQFQRS NLLELINNMD QPNQDQHKMM AFEKSNDFGF LEDKYFNTNS LMLWCDPLLT I

Best Arabidopsis Sequence Match ( AT1G07900.1 )
(BLAST)

001: MESKSDASVA TTPIISSSSS PPPSLSPRVV LSPCAACKIL RRRCAERCVL APYFPPTDPA KFTIAHRVFG ASNIIKFLQE LPESQRTDAV NSMVYEAEAR
101: IRDPVYGCAG AIYHLQRQVS ELQAQLAKAQ VEMVNMQFQR SNLLELIYNM DQQQKQEQDN MSFESNDLGF LEDKSNTNSS MLWWDPLWTC

Arabidopsis Description

LBD1LBD1 [Source:UniProtKB/TrEMBL;Acc:A0A178WM56]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.