Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- plastid 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU1Hr1G024490.1 | Barley | cytosol, mitochondrion, nucleus | 51.14 | 67.47 |
| TraesCS1B01G131900.2 | Wheat | nucleus | 72.15 | 66.67 |
| Os05t0165450-00 | Rice | extracellular | 75.34 | 66.53 |
| GSMUA_AchrUn_... | Banana | plastid | 55.71 | 66.3 |
| TraesCS1A01G111700.1 | Wheat | nucleus | 71.69 | 66.24 |
| TraesCS1D01G113100.1 | Wheat | nucleus | 70.78 | 65.96 |
| OQU77508 | Sorghum | cytosol, nucleus, plastid | 91.78 | 65.47 |
| GSMUA_Achr5P07460_001 | Banana | nucleus | 57.99 | 60.77 |
| GSMUA_Achr11P... | Banana | cytosol | 54.79 | 55.3 |
| VIT_13s0067g02380.t01 | Wine grape | nucleus | 54.79 | 53.57 |
| GSMUA_Achr7P22200_001 | Banana | nucleus | 51.6 | 53.55 |
| PGSC0003DMT400052995 | Potato | plastid | 46.58 | 50.75 |
| KRH53776 | Soybean | nucleus | 51.14 | 50.45 |
| Solyc06g050430.2.1 | Tomato | nucleus | 49.77 | 50.23 |
| PGSC0003DMT400078265 | Potato | cytosol, nucleus, plastid | 50.68 | 50.0 |
| KRH64170 | Soybean | nucleus | 49.77 | 49.1 |
| VIT_06s0004g07790.t01 | Wine grape | cytosol | 51.14 | 48.91 |
| CDY10726 | Canola | mitochondrion | 52.05 | 48.31 |
| CDY02059 | Canola | mitochondrion | 52.05 | 48.31 |
| Bra018320.1-P | Field mustard | mitochondrion | 52.05 | 48.31 |
| Solyc06g082430.1.1 | Tomato | cytosol, nucleus, plastid | 50.23 | 47.41 |
| Zm00001d043036_P001 | Maize | cytosol | 50.68 | 46.84 |
| KRH17149 | Soybean | cytosol, mitochondrion, nucleus | 51.6 | 45.38 |
| Solyc06g007390.2.1 | Tomato | nucleus | 48.4 | 44.54 |
| KRH72805 | Soybean | cytosol, mitochondrion, nucleus | 51.14 | 44.27 |
| AT2G30340.2 | Thale cress | nucleus | 52.05 | 42.38 |
| PGSC0003DMT400074783 | Potato | mitochondrion | 50.68 | 40.51 |
| Zm00001d013625_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 34.7 | 38.19 |
| Zm00001d038013_P001 | Maize | mitochondrion | 31.51 | 35.38 |
| Zm00001d033466_P001 | Maize | plastid | 33.79 | 35.07 |
| Zm00001d010978_P001 | Maize | plastid | 31.51 | 32.55 |
| Zm00001d035498_P001 | Maize | plastid | 32.42 | 32.13 |
| Zm00001d028721_P001 | Maize | plastid | 29.68 | 27.66 |
| Zm00001d039694_P001 | Maize | plastid | 32.42 | 27.2 |
| Zm00001d047752_P001 | Maize | plastid | 29.68 | 27.2 |
| Zm00001d042560_P002 | Maize | plastid | 30.14 | 25.38 |
| Zm00001d010264_P001 | Maize | plastid | 30.14 | 23.91 |
| Zm00001d033335_P001 | Maize | plastid | 28.31 | 22.06 |
| Zm00001d038197_P001 | Maize | plastid | 27.85 | 21.94 |
| Zm00001d013732_P001 | Maize | plastid | 27.4 | 20.07 |
| Zm00001d047521_P001 | Maize | plastid | 20.09 | 18.64 |
Protein Annotations
| EnsemblPlants:Zm00001d009823_P001 | EnsemblPlants:Zm00001d009823_T001 | EnsemblPlantsGene:Zm00001d009823 | EntrezGene:103635477 | InterPro:IPR004883 | InterPro:LOB |
| ncoils:Coil | PANTHER:PTHR31301 | PANTHER:PTHR31301:SF28 | PFAM:PF03195 | PFscan:PS50891 | ProteinID:AQK92769.1 |
| SEG:seg | UniParc:UPI0002209C0C | UniProt:K7UU76 | MapMan:15.5.24 | : | : |
Description
LBD-transcription factor 35Putative LOB domain-containing family protein
Coordinates
chr8:+:83961158..83963468
Molecular Weight (calculated)
22317.4 Da
IEP (calculated)
8.889
GRAVY (calculated)
0.189
Length
219 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAAARRSCS SPAGAGAVAG AAMNIITPCA ACKLLRRRCA QECPFSPYFS PLEPHKFAAV HRVFGASNVS KMLLEVHESQ RADTANSLVY EANLRLRDPV
101: YGCMGAILTL QQQVQALEAE LATVRAEIVR HSCRPAAAAV ATVLPSSHAS HLLAASAAAS RGLHAGSSKS VGARAATLAA AAAVGPAASS SSSSAVYAAA
201: ASSSTDYSSV TNENVPYFG
101: YGCMGAILTL QQQVQALEAE LATVRAEIVR HSCRPAAAAV ATVLPSSHAS HLLAASAAAS RGLHAGSSKS VGARAATLAA AAAVGPAASS SSSSAVYAAA
201: ASSSTDYSSV TNENVPYFG
001: MIGNNREGFG EYYETVKKIK KDPAFETTTD HAVMGIRRHV AVPPGTTLNT VTPCAACKLL RRRCAEECPF SPYFSPHEPH KFAAVHKVFG ASNVSKMLLE
101: VGESQRGDAA NSLVYEANLR LRDPIYGCMG AISALQHHIQ SLQSELTTVR TEILRHKYQE ATTITSLQNN FNSTTTTSSV SCDQHALASA ILLPPPPPPP
201: PTPRPPRLLS SQPAPPPTPP VSLPSPSMVV SSSSSSNSSA TNSMYNPPPS STAGYSNSLS SDNNVHYFD
101: VGESQRGDAA NSLVYEANLR LRDPIYGCMG AISALQHHIQ SLQSELTTVR TEILRHKYQE ATTITSLQNN FNSTTTTSSV SCDQHALASA ILLPPPPPPP
201: PTPRPPRLLS SQPAPPPTPP VSLPSPSMVV SSSSSSNSSA TNSMYNPPPS STAGYSNSLS SDNNVHYFD
Arabidopsis Description
LBD13LBD13 [Source:UniProtKB/TrEMBL;Acc:A0A178VRU4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.