Factsheet for Zm00001d043036_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU87769	Sorghum	cytosol	90.72	86.35
Os01t0825000-01	Rice	cytosol	75.11	70.92
TraesCS3D01G340000.1	Wheat	cytosol	71.73	68.55
TraesCS3A01G346300.1	Wheat	cytosol	71.73	68.0
GSMUA_Achr11P...	Banana	cytosol	55.7	60.83
GSMUA_Achr5P07460_001	Banana	nucleus	52.32	59.33
GSMUA_Achr7P22200_001	Banana	nucleus	52.32	58.77
VIT_13s0067g02380.t01	Wine grape	nucleus	55.27	58.48
TraesCS3B01G378100.1	Wheat	plastid	70.04	56.85
KRH53776	Soybean	nucleus	53.16	56.76
GSMUA_AchrUn_...	Banana	plastid	43.88	56.52
Solyc06g050430.2.1	Tomato	nucleus	51.48	56.22
KRH64170	Soybean	nucleus	52.32	55.86
VIT_06s0004g07790.t01	Wine grape	cytosol	52.74	54.59
Zm00001d009823_P001	Maize	plastid	46.84	50.68
HORVU3Hr1G088440.1	Barley	plastid	70.46	50.61
Solyc06g082430.1.1	Tomato	cytosol, nucleus, plastid	48.95	50.0
PGSC0003DMT400052995	Potato	plastid	41.77	49.25
Solyc06g007390.2.1	Tomato	nucleus	48.52	48.32
KRH17149	Soybean	cytosol, mitochondrion, nucleus	50.21	47.79
PGSC0003DMT400078265	Potato	cytosol, nucleus, plastid	44.73	47.75
KRH72805	Soybean	cytosol, mitochondrion, nucleus	50.21	47.04
CDY02059	Canola	mitochondrion	44.3	44.49
Bra018320.1-P	Field mustard	mitochondrion	43.88	44.07
CDY10726	Canola	mitochondrion	43.88	44.07
AT2G30340.2	Thale cress	nucleus	47.26	41.64
PGSC0003DMT400074783	Potato	mitochondrion	45.15	39.05
Zm00001d013625_P001	Maize	cytosol, mitochondrion, nucleus, plastid	32.49	38.69
Zm00001d038013_P001	Maize	mitochondrion	29.96	36.41
Zm00001d033466_P001	Maize	plastid	32.07	36.02
Zm00001d010978_P001	Maize	plastid	29.54	33.02
Zm00001d035498_P001	Maize	plastid	29.54	31.67
Zm00001d028721_P001	Maize	plastid	27.43	27.66
Zm00001d047752_P001	Maize	plastid	27.43	27.2
Zm00001d039694_P001	Maize	plastid	29.54	26.82
Zm00001d042560_P002	Maize	plastid	27.85	25.38
Zm00001d010264_P001	Maize	plastid	27.43	23.55
Zm00001d033335_P001	Maize	plastid	27.43	23.13
Zm00001d013732_P001	Maize	plastid	27.85	22.07
Zm00001d038197_P001	Maize	plastid	25.32	21.58
Zm00001d047521_P001	Maize	plastid	18.99	19.07

Protein Annotations

EMBL:BT068699	EMBL:KJ727720	EnsemblPlants:Zm00001d043036_P001	EnsemblPlants:Zm00001d043036_T001	EnsemblPlantsGene:Zm00001d043036	EntrezGene:100285303
InterPro:IPR004883	InterPro:LOB	ncoils:Coil	PANTHER:PTHR31301	PANTHER:PTHR31301:SF20	PFAM:PF03195
PFscan:PS50891	ProteinID:ONM36754.1	SEG:seg	UniParc:UPI000195CD51	UniProt:C0PK80	MapMan:15.5.24

Description

LBD-transcription factor 20LOB domain-containing protein 13

Coordinates

chr3:-:187095368..187096814

Molecular Weight (calculated)

25443.1 Da

IEP (calculated)

6.507

GRAVY (calculated)

-0.197

Length

237 amino acids

Sequence
(BLAST)

001: MSTERERLDE IGKIKREPDT AALAVAAASA STVPADNHIP RRLGHGGALN TLTPCAACKL LRRRCAQECP FAPYFSPHEP HKFAAVHKVF GASNVSKMLL
101: EVVEGERADT ASSLVYEANL RLRDPVYGCM GAISILQQQV NALEAELEAV RAEILKHRYR QATGNRLMDD VRATASFVLA PASAPMHVND VVSVVEAGQE
201: VTATGGASGV YIAEAEQPSS TNNYSSLNPS EHPAYFG

Best Arabidopsis Sequence Match ( AT2G40470.1 )
(BLAST)

001: MSRERERFEE IGKKIKREAD AWPHQMAGIR RPMSGPPGTL NTITPCAACK LLRRRCAQEC PFSPYFSPHE PHKFASVHKV FGASNVSKML MEVPESQRAD
101: AANSLVYEAN VRLRDPVYGC MGAISALQQQ VQALQAELTA VRSEILKYKQ REAVATLIVP SNSQVAGFHN SGGVSVIAPP PQRPTTPPQP TTAHPPSPSS
201: CVFSQPTTRD LEYGNIESEN NYFG

Arabidopsis Description

LBD15LOB domain-containing protein 15 [Source:UniProtKB/Swiss-Prot;Acc:Q8L5T5]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.