Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d043036_P001 | Maize | cytosol | 70.92 | 75.11 |
| TraesCS3A01G346300.1 | Wheat | cytosol | 71.71 | 72.0 |
| OQU87769 | Sorghum | cytosol | 71.31 | 71.89 |
| TraesCS3D01G340000.1 | Wheat | cytosol | 70.92 | 71.77 |
| GSMUA_Achr11P... | Banana | cytosol | 53.39 | 61.75 |
| GSMUA_AchrUn_... | Banana | plastid | 44.62 | 60.87 |
| GSMUA_Achr7P22200_001 | Banana | nucleus | 51.0 | 60.66 |
| GSMUA_Achr5P07460_001 | Banana | nucleus | 49.8 | 59.81 |
| TraesCS3B01G378100.1 | Wheat | plastid | 69.32 | 59.59 |
| VIT_13s0067g02380.t01 | Wine grape | nucleus | 52.99 | 59.38 |
| Solyc06g050430.2.1 | Tomato | nucleus | 49.8 | 57.6 |
| KRH53776 | Soybean | nucleus | 50.2 | 56.76 |
| KRH64170 | Soybean | nucleus | 50.2 | 56.76 |
| VIT_06s0004g07790.t01 | Wine grape | cytosol | 49.4 | 54.15 |
| HORVU3Hr1G088440.1 | Barley | plastid | 70.92 | 53.94 |
| Solyc06g082430.1.1 | Tomato | cytosol, nucleus, plastid | 46.61 | 50.43 |
| Os05t0165450-00 | Rice | extracellular | 49.0 | 49.6 |
| PGSC0003DMT400052995 | Potato | plastid | 39.04 | 48.76 |
| PGSC0003DMT400078265 | Potato | cytosol, nucleus, plastid | 42.63 | 48.2 |
| Solyc06g007390.2.1 | Tomato | nucleus | 45.42 | 47.9 |
| KRH17149 | Soybean | cytosol, mitochondrion, nucleus | 46.61 | 46.99 |
| KRH72805 | Soybean | cytosol, mitochondrion, nucleus | 47.01 | 46.64 |
| CDY02059 | Canola | mitochondrion | 43.03 | 45.76 |
| Os11t0106900-01 | Rice | mitochondrion | 28.29 | 45.51 |
| Os12t0106200-01 | Rice | mitochondrion | 28.29 | 45.51 |
| Bra018320.1-P | Field mustard | mitochondrion | 42.63 | 45.34 |
| CDY10726 | Canola | mitochondrion | 42.63 | 45.34 |
| AT2G30340.2 | Thale cress | nucleus | 46.22 | 43.12 |
| PGSC0003DMT400074783 | Potato | mitochondrion | 43.03 | 39.42 |
| Os05t0346800-00 | Rice | cytosol, nucleus | 29.08 | 35.27 |
| Os01t0169400-01 | Rice | plastid | 29.08 | 29.08 |
| Os03t0287400-01 | Rice | plastid | 27.49 | 28.87 |
| Os05t0417000-00 | Rice | plastid | 28.29 | 25.45 |
| Os01t0889400-02 | Rice | plastid | 26.69 | 24.91 |
| Os03t0612400-00 | Rice | cytosol, nucleus | 26.29 | 16.62 |
Protein Annotations
| MapMan:15.5.24 | EntrezGene:4327581 | EMBL:AK121919 | ProteinID:BAD73444.1 | ProteinID:BAD87090.1 | ProteinID:BAF06583.1 |
| ProteinID:BAS75008.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0016787 | InterPro:IPR004883 | InterPro:LOB | EnsemblPlantsGene:Os01g0825000 | EnsemblPlants:Os01t0825000-01 | PFAM:PF03195 |
| PFscan:PS50891 | PANTHER:PTHR31301 | PANTHER:PTHR31301:SF20 | UniProt:Q5QMB4 | UniParc:UPI000048DF86 | RefSeq:XP_015636038.1 |
| SEG:seg | : | : | : | : | : |
Description
Similar to LOB domain protein 12. (Os01t0825000-01)
Coordinates
chr1:+:35257561..35259062
Molecular Weight (calculated)
26494.5 Da
IEP (calculated)
6.941
GRAVY (calculated)
-0.173
Length
251 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTERERLDE IGKKIKREPD TAGVVVAAVA GTGTGTATPI EHRVPHRLGL GGAVNTVTPC AACKLLRRRC AQECPFAPYF SPHEPHKFAA VHKVFGASNV
101: SKMLLEVGEA ERADAASSLV YEANLRLRDP VYGCMGAISM LQQQVNALEA ELEAVRAEIF KRRYRQAGAA TGLMDDVQVH ITAGFAAPPP PPSMHARDVV
201: SVADAGGQGQ ELAGAPVISS ASPPVYPAGQ PSTSTTDYSS LNTSEHAAYF G
101: SKMLLEVGEA ERADAASSLV YEANLRLRDP VYGCMGAISM LQQQVNALEA ELEAVRAEIF KRRYRQAGAA TGLMDDVQVH ITAGFAAPPP PPSMHARDVV
201: SVADAGGQGQ ELAGAPVISS ASPPVYPAGQ PSTSTTDYSS LNTSEHAAYF G
001: MSRERERFEE IGKKIKREAD AWPHQMAGIR RPMSGPPGTL NTITPCAACK LLRRRCAQEC PFSPYFSPHE PHKFASVHKV FGASNVSKML MEVPESQRAD
101: AANSLVYEAN VRLRDPVYGC MGAISALQQQ VQALQAELTA VRSEILKYKQ REAVATLIVP SNSQVAGFHN SGGVSVIAPP PQRPTTPPQP TTAHPPSPSS
201: CVFSQPTTRD LEYGNIESEN NYFG
101: AANSLVYEAN VRLRDPVYGC MGAISALQQQ VQALQAELTA VRSEILKYKQ REAVATLIVP SNSQVAGFHN SGGVSVIAPP PQRPTTPPQP TTAHPPSPSS
201: CVFSQPTTRD LEYGNIESEN NYFG
Arabidopsis Description
LBD15LOB domain-containing protein 15 [Source:UniProtKB/Swiss-Prot;Acc:Q8L5T5]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.