Factsheet for TraesCS3B01G378100.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
endoplasmic reticulum 2
extracellular 1
vacuole 2
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid, secretory
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G340000.1	Wheat	cytosol	80.82	95.16
TraesCS3A01G346300.1	Wheat	cytosol	80.48	94.0
HORVU3Hr1G088440.1	Barley	plastid	87.67	77.58
Zm00001d043036_P001	Maize	cytosol	56.85	70.04
Os01t0825000-01	Rice	cytosol	59.59	69.32
OQU87769	Sorghum	cytosol	58.56	68.67
GSMUA_Achr11P...	Banana	cytosol	47.26	63.59
GSMUA_Achr5P07460_001	Banana	nucleus	43.84	61.24
VIT_13s0067g02380.t01	Wine grape	nucleus	46.23	60.27
GSMUA_AchrUn_...	Banana	plastid	37.67	59.78
GSMUA_Achr7P22200_001	Banana	nucleus	42.81	59.24
KRH53776	Soybean	nucleus	43.15	56.76
KRH64170	Soybean	nucleus	43.15	56.76
Solyc06g050430.2.1	Tomato	nucleus	42.12	56.68
VIT_06s0004g07790.t01	Wine grape	cytosol	42.47	54.15
TraesCS1B01G131900.2	Wheat	nucleus	41.78	51.48
Solyc06g082430.1.1	Tomato	cytosol, nucleus, plastid	40.07	50.43
Solyc06g007390.2.1	Tomato	nucleus	40.41	49.58
PGSC0003DMT400052995	Potato	plastid	33.56	48.76
PGSC0003DMT400078265	Potato	cytosol, nucleus, plastid	36.64	48.2
KRH17149	Soybean	cytosol, mitochondrion, nucleus	39.73	46.59
KRH72805	Soybean	cytosol, mitochondrion, nucleus	40.07	46.25
CDY02059	Canola	mitochondrion	35.62	44.07
Bra018320.1-P	Field mustard	mitochondrion	35.27	43.64
CDY10726	Canola	mitochondrion	35.27	43.64
TraesCS5B01G150800.1	Wheat	plastid	25.68	42.37
AT2G30340.2	Thale cress	nucleus	38.36	41.64
TraesCS4B01G016200.1	Wheat	plastid	24.32	40.57
TraesCS1B01G235700.1	Wheat	mitochondrion	25.68	39.68
PGSC0003DMT400074783	Potato	mitochondrion	36.64	39.05
TraesCS4B01G197100.1	Wheat	plastid	24.66	32.29
TraesCS1B01G080600.1	Wheat	cytosol, plastid	23.63	32.09
TraesCS3B01G108500.1	Wheat	plastid	25.0	28.4
TraesCS3B01G435700.1	Wheat	plastid	22.26	25.1
TraesCS4B01G079900.1	Wheat	mitochondrion, nucleus, plastid	23.97	24.65
TraesCS1B01G270400.1	Wheat	plastid	21.58	23.95

Protein Annotations

EnsemblPlants:TraesCS3B01G378100.1	EnsemblPlantsGene:TraesCS3B01G378100	InterPro:IPR004883	InterPro:LOB	ncoils:Coil	PANTHER:PTHR31301
PANTHER:PTHR31301:SF20	PFAM:PF03195	PFscan:PS50891	SEG:seg	SignalP:SignalP-noTM	MapMan:15.5.24

Description

No Description!

Coordinates

chr3B:+:596047471..596048757

Molecular Weight (calculated)

30655.5 Da

IEP (calculated)

6.341

GRAVY (calculated)

0.025

Length

292 amino acids

Sequence
(BLAST)

001: MPCLLSTLSF LAIPNFTLLY SPSLSIVPVS SVSPSPRRGG EHASMSTERE RLDEIGKKIK REPDPASAIA GVVVAVSQTE HHVPRRLGLV GPGIGGAANI
101: ATPCAACKLL RRRCAHECPF APYFSPHEPH KFAAVHKVFG ASNVSKMLLE VPEPERADAA SSLVYEANLR LGDPVYGCMG AISMLQQQVN ALEAELQAVR
201: AEIFKHRYRQ TGVGVGVGAA NLIVDDDVSA AAAGGFMAPA TSLVHTAGVV SVAEAGQEVD TMPSTATAYA AGQPSSTDYS SLDTSEHDAY FG

Best Arabidopsis Sequence Match ( AT2G40470.1 )
(BLAST)

001: MSRERERFEE IGKKIKREAD AWPHQMAGIR RPMSGPPGTL NTITPCAACK LLRRRCAQEC PFSPYFSPHE PHKFASVHKV FGASNVSKML MEVPESQRAD
101: AANSLVYEAN VRLRDPVYGC MGAISALQQQ VQALQAELTA VRSEILKYKQ REAVATLIVP SNSQVAGFHN SGGVSVIAPP PQRPTTPPQP TTAHPPSPSS
201: CVFSQPTTRD LEYGNIESEN NYFG

Arabidopsis Description

LBD15LOB domain-containing protein 15 [Source:UniProtKB/Swiss-Prot;Acc:Q8L5T5]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.