CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

plastid 3
cytosol 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d009823_P001	Maize	plastid	65.47	91.78
HORVU1Hr1G024490.1	Barley	cytosol, mitochondrion, nucleus	43.32	80.12
TraesCS1B01G131900.2	Wheat	nucleus	58.96	76.37
TraesCS1D01G113100.1	Wheat	nucleus	58.31	76.17
TraesCS1A01G111700.1	Wheat	nucleus	58.63	75.95
Os05t0165450-00	Rice	extracellular	60.91	75.4
GSMUA_Achr5P07460_001	Banana	nucleus	45.6	66.99
GSMUA_AchrUn_...	Banana	plastid	40.07	66.85
GSMUA_Achr11P...	Banana	cytosol	43.32	61.29
VIT_13s0067g02380.t01	Wine grape	nucleus	44.3	60.71
GSMUA_Achr7P22200_001	Banana	nucleus	41.37	60.19
KRH53776	Soybean	nucleus	42.02	58.11
Solyc06g050430.2.1	Tomato	nucleus	40.39	57.14
KRH64170	Soybean	nucleus	41.04	56.76
VIT_06s0004g07790.t01	Wine grape	cytosol	41.69	55.9
PGSC0003DMT400078265	Potato	cytosol, nucleus, plastid	39.74	54.95
Solyc06g082430.1.1	Tomato	cytosol, nucleus, plastid	40.72	53.88
OQU87769	Sorghum	cytosol	43.0	53.01
PGSC0003DMT400052995	Potato	plastid	34.53	52.74
Solyc06g007390.2.1	Tomato	nucleus	39.09	50.42
KRH17149	Soybean	cytosol, mitochondrion, nucleus	40.72	50.2
Bra018320.1-P	Field mustard	mitochondrion	38.44	50.0
CDY02059	Canola	mitochondrion	38.44	50.0
CDY10726	Canola	mitochondrion	38.44	50.0
KRH72805	Soybean	cytosol, mitochondrion, nucleus	40.72	49.41
AT2G30340.2	Thale cress	nucleus	40.07	45.72
PGSC0003DMT400074783	Potato	mitochondrion	37.78	42.34
EER93717	Sorghum	plastid	27.04	40.1
KXG22772	Sorghum	plastid	25.41	37.5
EES07852	Sorghum	plastid	25.41	36.62
EES18939	Sorghum	plastid	23.78	33.33
EES19343	Sorghum	mitochondrion	23.45	33.18
EES00235	Sorghum	plastid	23.78	27.24
EER92422	Sorghum	plastid	20.85	27.23
OQU78015	Sorghum	plastid	21.82	21.75
EER93817	Sorghum	plastid	20.85	21.55
OQU88012	Sorghum	mitochondrion, vacuole	21.17	19.58

Protein Annotations

EnsemblPlants:OQU77508	EnsemblPlantsGene:SORBI_3009G058600	InterPro:IPR004883	InterPro:LOB	ncoils:Coil	PANTHER:PTHR31301
PANTHER:PTHR31301:SF28	PFAM:PF03195	PFscan:PS50891	ProteinID:OQU77508	ProteinID:OQU77508.1	SEG:seg
UniParc:UPI000B423872	UniProt:A0A1Z5R139	MapMan:15.5.24	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:6127178..6129463

Molecular Weight (calculated)

32502.8 Da

IEP (calculated)

9.686

GRAVY (calculated)

-0.041

Length

307 amino acids

Sequence
(BLAST)

001: MVQEHPYISC STISCQHRRI LLILLCQAHT LKRHKHRKPR SHLFQSTSIP FLSPQAIFFM STASASEWPD HDELGKKIKR ESAAERMTAA ARRSCSSPVG
101: AGAVAGAGPG SALNTITPCA ACKLLRRRCA QECPFSPYFS PLEPHKFAAV HKVFGASNVS KMLLEVHESQ RADTANSLVY EANLRLRDPV YGCMGAILTL
201: QQQVQALEAE LATVRAEIVR HRCRPAAVLP SSHASQLLAA SAAGRGLHAG SRPSVGARAA TLAAAAAAAA VGPVASSSSS SAVYAAAAAS SSTDYSSITN
301: ENVPYFG

Best Arabidopsis Sequence Match ( AT2G30340.2 )
(BLAST)

001: MIGNNREGFG EYYETVKKIK KDPAFETTTD HAVMGIRRHV AVPPGTTLNT VTPCAACKLL RRRCAEECPF SPYFSPHEPH KFAAVHKVFG ASNVSKMLLE
101: VGESQRGDAA NSLVYEANLR LRDPIYGCMG AISALQHHIQ SLQSELTTVR TEILRHKYQE ATTITSLQNN FNSTTTTSSV SCDQHALASA ILLPPPPPPP
201: PTPRPPRLLS SQPAPPPTPP VSLPSPSMVV SSSSSSNSSA TNSMYNPPPS STAGYSNSLS SDNNVHYFD

Arabidopsis Description

LBD13LBD13 [Source:UniProtKB/TrEMBL;Acc:A0A178VRU4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.