Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 2
- vacuole 3
- plasma membrane 2
- golgi 2
- mitochondrion 4
- nucleus 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Zm00001d042560_P002 | Maize | plastid | 76.2 | 97.31 |
Os01t0889400-02 | Rice | plastid | 64.76 | 79.93 |
TraesCS3D01G397200.1 | Wheat | plastid | 59.94 | 76.83 |
TraesCS3B01G435700.1 | Wheat | plastid | 59.94 | 76.83 |
TraesCS3A01G402300.1 | Wheat | plastid | 59.64 | 76.45 |
Solyc03g063140.2.1 | Tomato | nucleus, plastid | 30.12 | 57.47 |
OQU78015 | Sorghum | plastid | 52.71 | 56.82 |
AT1G65620.1 | Thale cress | plastid | 32.53 | 54.27 |
Bra039733.1-P | Field mustard | nucleus, plastid | 32.53 | 53.47 |
CDY16414 | Canola | nucleus, plastid | 32.53 | 53.47 |
CDY46781 | Canola | nucleus, plastid | 32.53 | 53.47 |
PGSC0003DMT400002549 | Potato | plastid | 30.42 | 53.44 |
HORVU3Hr1G090240.2 | Barley | plastid | 42.47 | 52.22 |
HORVU3Hr1G090250.5 | Barley | plastid | 42.47 | 52.22 |
VIT_00s0340g00090.t01 | Wine grape | nucleus | 31.63 | 48.61 |
KRH20638 | Soybean | nucleus | 30.12 | 46.73 |
KRH13283 | Soybean | nucleus | 29.82 | 46.7 |
Solyc11g008830.1.1 | Tomato | plastid | 31.63 | 45.65 |
KRG88909 | Soybean | nucleus | 27.41 | 42.52 |
EER93717 | Sorghum | plastid | 21.39 | 34.3 |
KXG22772 | Sorghum | plastid | 21.39 | 34.13 |
EES07852 | Sorghum | plastid | 21.39 | 33.33 |
EES00235 | Sorghum | plastid | 26.81 | 33.21 |
EES19343 | Sorghum | mitochondrion | 21.39 | 32.72 |
EES18939 | Sorghum | plastid | 18.98 | 28.77 |
EER93817 | Sorghum | plastid | 25.6 | 28.62 |
OQU87769 | Sorghum | cytosol | 20.78 | 27.71 |
EER92422 | Sorghum | plastid | 19.58 | 27.66 |
OQU77508 | Sorghum | cytosol, nucleus, plastid | 19.58 | 21.17 |
Protein Annotations
EnsemblPlants:OQU88012 | EnsemblPlantsGene:SORBI_3003G383700 | InterPro:IPR004883 | InterPro:LOB | ncoils:Coil | PANTHER:PTHR31301 |
PANTHER:PTHR31301:SF33 | PFAM:PF03195 | PFscan:PS50891 | ProteinID:OQU88012 | ProteinID:OQU88012.1 | SEG:seg |
UniParc:UPI0009DC8A82 | UniProt:A0A1W0W0W9 | MapMan:15.5.24 | : | : | : |
Description
hypothetical protein
Coordinates
chr3:-:69668023..69671357
Molecular Weight (calculated)
34637.2 Da
IEP (calculated)
9.040
GRAVY (calculated)
-0.037
Length
332 amino acids
Sequence
(BLAST)
(BLAST)
001: MVLHKAPVSK GLFFFLCPPR LRALSLRASQ LGDDYAKCPG LLQARSLLLY TSFPGLLRSS DSSSPATSTA SRRMASSVPA PSGSVITVAS SSSSAAAAAV
101: CGTGSPCAAC KFLRRKCQPD CVFAPYFPPD NPQKFVHVHR VFGASNVTKL LNELHPFQRE DAVNSLAYEA DMRLRDPVYG CVGVISILQH NLRQLQQDLA
201: RAKYELSKYQ AAAAASASTA APNGPQAMAE FIGNAMPNGA HNFINIGHSA ALGSLGGSAT VFGQEQFANA QMLSRSYDGE PIARLGINGG YEFGYSTAMG
301: GSGAVSGLGT LGISPFLKSG TAGGDEKPSG GY
101: CGTGSPCAAC KFLRRKCQPD CVFAPYFPPD NPQKFVHVHR VFGASNVTKL LNELHPFQRE DAVNSLAYEA DMRLRDPVYG CVGVISILQH NLRQLQQDLA
201: RAKYELSKYQ AAAAASASTA APNGPQAMAE FIGNAMPNGA HNFINIGHSA ALGSLGGSAT VFGQEQFANA QMLSRSYDGE PIARLGINGG YEFGYSTAMG
301: GSGAVSGLGT LGISPFLKSG TAGGDEKPSG GY
001: MASSSTNSPC AACKFLRRKC QPECVFAPYF PPDQPQKFAN VHKVFGASNV TKLLNELHPS QREDAVNSLA YEADMRLRDP VYGCVGVISL LQHQLRQLQI
101: DLSCAKSELS KYQSLGILAA THQSLGINLL AGAADGTATA VRDHYHHHQF FPREQMFGGL DVPAGNNYDG GILAIGQITQ FQQPRAAAGD DGRRTVDPS
101: DLSCAKSELS KYQSLGILAA THQSLGINLL AGAADGTATA VRDHYHHHQF FPREQMFGGL DVPAGNNYDG GILAIGQITQ FQQPRAAAGD DGRRTVDPS
Arabidopsis Description
AS2AS2 [Source:UniProtKB/TrEMBL;Acc:A0A178WIA0]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.