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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, vacuole

Predictor Summary:
  • extracellular 2
  • endoplasmic reticulum 2
  • vacuole 3
  • plasma membrane 2
  • golgi 2
  • mitochondrion 4
  • nucleus 1
PPI

Inferred distinct locusB in Crop

locusBlocations
EER92557 nucleus
EES17234 nucleus
KXG38649 nucleus
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d042560_P002 Maize plastid 76.2 97.31
Os01t0889400-02 Rice plastid 64.76 79.93
TraesCS3D01G397200.1 Wheat plastid 59.94 76.83
TraesCS3B01G435700.1 Wheat plastid 59.94 76.83
TraesCS3A01G402300.1 Wheat plastid 59.64 76.45
Solyc03g063140.2.1 Tomato nucleus, plastid 30.12 57.47
OQU78015 Sorghum plastid 52.71 56.82
AT1G65620.1 Thale cress plastid 32.53 54.27
Bra039733.1-P Field mustard nucleus, plastid 32.53 53.47
CDY16414 Canola nucleus, plastid 32.53 53.47
CDY46781 Canola nucleus, plastid 32.53 53.47
PGSC0003DMT400002549 Potato plastid 30.42 53.44
HORVU3Hr1G090240.2 Barley plastid 42.47 52.22
HORVU3Hr1G090250.5 Barley plastid 42.47 52.22
VIT_00s0340g00090.t01 Wine grape nucleus 31.63 48.61
KRH20638 Soybean nucleus 30.12 46.73
KRH13283 Soybean nucleus 29.82 46.7
Solyc11g008830.1.1 Tomato plastid 31.63 45.65
KRG88909 Soybean nucleus 27.41 42.52
EER93717 Sorghum plastid 21.39 34.3
KXG22772 Sorghum plastid 21.39 34.13
EES07852 Sorghum plastid 21.39 33.33
EES00235 Sorghum plastid 26.81 33.21
EES19343 Sorghum mitochondrion 21.39 32.72
EES18939 Sorghum plastid 18.98 28.77
EER93817 Sorghum plastid 25.6 28.62
OQU87769 Sorghum cytosol 20.78 27.71
EER92422 Sorghum plastid 19.58 27.66
OQU77508 Sorghum cytosol, nucleus, plastid 19.58 21.17
Protein Annotations
EnsemblPlants:OQU88012EnsemblPlantsGene:SORBI_3003G383700InterPro:IPR004883InterPro:LOBncoils:CoilPANTHER:PTHR31301
PANTHER:PTHR31301:SF33PFAM:PF03195PFscan:PS50891ProteinID:OQU88012ProteinID:OQU88012.1SEG:seg
UniParc:UPI0009DC8A82UniProt:A0A1W0W0W9MapMan:15.5.24:::
Description
hypothetical protein
Coordinates
chr3:-:69668023..69671357
Molecular Weight (calculated)
34637.2 Da
IEP (calculated)
9.040
GRAVY (calculated)
-0.037
Length
332 amino acids
Sequence
(BLAST)
001: MVLHKAPVSK GLFFFLCPPR LRALSLRASQ LGDDYAKCPG LLQARSLLLY TSFPGLLRSS DSSSPATSTA SRRMASSVPA PSGSVITVAS SSSSAAAAAV
101: CGTGSPCAAC KFLRRKCQPD CVFAPYFPPD NPQKFVHVHR VFGASNVTKL LNELHPFQRE DAVNSLAYEA DMRLRDPVYG CVGVISILQH NLRQLQQDLA
201: RAKYELSKYQ AAAAASASTA APNGPQAMAE FIGNAMPNGA HNFINIGHSA ALGSLGGSAT VFGQEQFANA QMLSRSYDGE PIARLGINGG YEFGYSTAMG
301: GSGAVSGLGT LGISPFLKSG TAGGDEKPSG GY
Best Arabidopsis Sequence Match ( AT1G65620.2 )
(BLAST)
001: MASSSTNSPC AACKFLRRKC QPECVFAPYF PPDQPQKFAN VHKVFGASNV TKLLNELHPS QREDAVNSLA YEADMRLRDP VYGCVGVISL LQHQLRQLQI
101: DLSCAKSELS KYQSLGILAA THQSLGINLL AGAADGTATA VRDHYHHHQF FPREQMFGGL DVPAGNNYDG GILAIGQITQ FQQPRAAAGD DGRRTVDPS
Arabidopsis Description
AS2AS2 [Source:UniProtKB/TrEMBL;Acc:A0A178WIA0]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.