Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d030737_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G29390.1 | Zm00001d030737_P001 | AT2G37630.1 | 16243907 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG39878 | Sorghum | nucleus | 85.67 | 86.18 |
| TraesCS4D01G246700.1 | Wheat | nucleus | 64.4 | 71.71 |
| TraesCS4B01G247400.2 | Wheat | cytosol | 62.33 | 70.45 |
| TraesCS4A01G057600.3 | Wheat | cytosol, endoplasmic reticulum, nucleus | 64.11 | 70.34 |
| Os03t0213900-02 | Rice | cytosol, nucleus | 37.37 | 66.06 |
| HORVU4Hr1G067960.4 | Barley | endoplasmic reticulum, extracellular | 41.65 | 61.17 |
| Bra036212.1-P | Field mustard | cytosol | 11.82 | 51.28 |
| GSMUA_Achr6P24580_001 | Banana | nucleus | 37.37 | 48.94 |
| CDY44389 | Canola | nucleus | 31.91 | 48.0 |
| CDY04081 | Canola | nucleus | 37.22 | 46.49 |
| GSMUA_AchrUn_... | Banana | nucleus | 6.06 | 46.07 |
| Bra033103.1-P | Field mustard | nucleus | 37.08 | 45.23 |
| Solyc02g066940.2.1 | Tomato | nucleus | 39.59 | 45.19 |
| VIT_14s0068g00240.t01 | Wine grape | nucleus | 43.87 | 45.07 |
| CDY38575 | Canola | extracellular, mitochondrion, plastid | 11.67 | 44.89 |
| AT3G29390.1 | Thale cress | nucleus | 37.96 | 44.46 |
| KRH01276 | Soybean | nucleus | 42.54 | 44.17 |
| PGSC0003DMT400064730 | Potato | nucleus | 38.4 | 43.92 |
| KRH45025 | Soybean | nucleus | 41.21 | 43.39 |
Protein Annotations
| EnsemblPlants:Zm00001d028208_P009 | EnsemblPlants:Zm00001d028208_T009 | EnsemblPlantsGene:Zm00001d028208 | EntrezGene:732737 | Gene3D:3.30.1370.10 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | InterPro:IPR036612 | InterPro:KH_dom_type_1_sf | ncoils:Coil | ProteinID:ONL95060.1 | SEG:seg |
| SUPFAM:SSF54791 | UniParc:UPI0008445EF0 | UniProt:A0A1D6JT33 | MapMan:35.1 | : | : |
Description
Protein RIK
Coordinates
chr1:+:26428428..26434744
Molecular Weight (calculated)
72344.9 Da
IEP (calculated)
7.199
GRAVY (calculated)
-0.360
Length
677 amino acids
Sequence
(BLAST)
(BLAST)
001: MTEDRAHKVA DEPAASGRQR PERKKRKWDQ PAEDLVSAAV TAAAVSGMPV MNFGALPGVV LPGVTAYGAA TLPSVVPVPY SLPPHIAPSV LQNAAAAAQK
101: LSQAKIPDEV IAREIVINDA DPSVRYKLTK RQTQEEIQKC TNTVIITRGK YHPPNLLPDG EKPLYLHISA GSQLKDTAER IKAVDRAASM IEEILKQGTT
201: SESISVPFSS STGQAVRPFS ASVFLGFDAD PSLNITARIR GPNDQYINHI MKETGVTVVL RGKDSENLGS CHSEASQQPL HLYLTSMHLK NLEAAKVLAE
301: NLLDTVAAEF GASRISSSKV YGAVPPPQQL LAGVDTSGTK SDVHYIVGPN VLSGATHSFA STGVIAPVVA PAVTVQSGAP TYSGVPLPSN MAYPIPPANG
401: GAFYSGYGDI YPQATPLQQL AFTLKHASSS ATQAVPVTST PTSMATKGNS ILDAEMDKRS RRKFQELPVS KGPATESQVQ FFFLNLMDES SCFLSSFQNS
501: QQGSKFVKTG LDSSGNIGSS SIAPPKKVHP GSNGMLPQEE ADMPSHLSIS TKMLPPPLKS MLPLPPRSMP PPPPKSMPPP PPKFPSDEFL SRNENKFFPL
601: KEPTAPPRSF DAISVLPSER RPREPKEEKT KGTPVSDTLL KLIDYGDDDD DGDIDVTDNT PKGNPTPGSE QKPFWAV
101: LSQAKIPDEV IAREIVINDA DPSVRYKLTK RQTQEEIQKC TNTVIITRGK YHPPNLLPDG EKPLYLHISA GSQLKDTAER IKAVDRAASM IEEILKQGTT
201: SESISVPFSS STGQAVRPFS ASVFLGFDAD PSLNITARIR GPNDQYINHI MKETGVTVVL RGKDSENLGS CHSEASQQPL HLYLTSMHLK NLEAAKVLAE
301: NLLDTVAAEF GASRISSSKV YGAVPPPQQL LAGVDTSGTK SDVHYIVGPN VLSGATHSFA STGVIAPVVA PAVTVQSGAP TYSGVPLPSN MAYPIPPANG
401: GAFYSGYGDI YPQATPLQQL AFTLKHASSS ATQAVPVTST PTSMATKGNS ILDAEMDKRS RRKFQELPVS KGPATESQVQ FFFLNLMDES SCFLSSFQNS
501: QQGSKFVKTG LDSSGNIGSS SIAPPKKVHP GSNGMLPQEE ADMPSHLSIS TKMLPPPLKS MLPLPPRSMP PPPPKSMPPP PPKFPSDEFL SRNENKFFPL
601: KEPTAPPRSF DAISVLPSER RPREPKEEKT KGTPVSDTLL KLIDYGDDDD DGDIDVTDNT PKGNPTPGSE QKPFWAV
001: MTEDNDEARV PLSDSSTTND ASRTRQRRKR KWDKPAEQLV AAGVAFPQLL PLGNTMNVPS MSPLLQTLSV PLAVPKVNQP KIQDEVIIAR EIVINDAEAS
101: LRHRLTKRST QEDIQRSTGA VVITRGKYRP PNAPPDGEKP LYLHISAAAQ LQLKETTERI LAVDRAAAMI EEMMKQKSIS QIGSVGLQTV KMLSTCVYLG
201: FEADPSSNVA ARIRGPNDQY INHIMNETGA TVVLRGRGSG SLENQHGDEA QLPLHLLLSG SNPKSIDDAK RLAENLMDTI SVEFGASRVS SSKVYGAVPP
301: PQQLISGAPG SDQENQNLIS TYGLMTSIPI TAPPYAVSSF PVTPATSLYP QFPVMQSLGI SNGGPSQPVA GGTSYSGYAG IYPQATPLQQ VAQVLKQSIS
401: PVISTVPPTM LTATSLSIPS DNASNEMERR PPRKRKFQEL PADCKVPEKD KQQSELAMTG DVTPSANRVR SPPSPRSVMP PPPPKTIAPP PSKTMSPPSS
501: KSMLPPPPRS KTMSPLSSKS MLPPPPRFTL TTQRSRLQDN HISVKKPNPV PDTLIKLMEY GDDEDDDDDP DEPLTTRS
101: LRHRLTKRST QEDIQRSTGA VVITRGKYRP PNAPPDGEKP LYLHISAAAQ LQLKETTERI LAVDRAAAMI EEMMKQKSIS QIGSVGLQTV KMLSTCVYLG
201: FEADPSSNVA ARIRGPNDQY INHIMNETGA TVVLRGRGSG SLENQHGDEA QLPLHLLLSG SNPKSIDDAK RLAENLMDTI SVEFGASRVS SSKVYGAVPP
301: PQQLISGAPG SDQENQNLIS TYGLMTSIPI TAPPYAVSSF PVTPATSLYP QFPVMQSLGI SNGGPSQPVA GGTSYSGYAG IYPQATPLQQ VAQVLKQSIS
401: PVISTVPPTM LTATSLSIPS DNASNEMERR PPRKRKFQEL PADCKVPEKD KQQSELAMTG DVTPSANRVR SPPSPRSVMP PPPPKTIAPP PSKTMSPPSS
501: KSMLPPPPRS KTMSPLSSKS MLPPPPRFTL TTQRSRLQDN HISVKKPNPV PDTLIKLMEY GDDEDDDDDP DEPLTTRS
Arabidopsis Description
RIKProtein RIK [Source:UniProtKB/Swiss-Prot;Acc:Q9LIA4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.