Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY44389 | Canola | nucleus | 59.17 | 76.0 |
| Bra033103.1-P | Field mustard | nucleus | 67.82 | 70.63 |
| CDY04081 | Canola | nucleus | 65.92 | 70.3 |
| Bra036212.1-P | Field mustard | cytosol | 18.51 | 68.59 |
| CDY38575 | Canola | extracellular, mitochondrion, plastid | 17.13 | 56.25 |
| PGSC0003DMT400064730 | Potato | nucleus | 47.06 | 45.95 |
| KRH45025 | Soybean | nucleus | 50.87 | 45.72 |
| Solyc02g066940.2.1 | Tomato | nucleus | 46.54 | 45.36 |
| GSMUA_AchrUn_... | Banana | nucleus | 6.92 | 44.94 |
| KRH01276 | Soybean | nucleus | 50.52 | 44.79 |
| VIT_14s0068g00240.t01 | Wine grape | nucleus | 50.0 | 43.85 |
| TraesCS4B01G247400.2 | Wheat | cytosol | 42.91 | 41.4 |
| TraesCS4D01G246700.1 | Wheat | nucleus | 43.25 | 41.12 |
| TraesCS4A01G057600.3 | Wheat | cytosol, endoplasmic reticulum, nucleus | 43.08 | 40.36 |
| KXG39878 | Sorghum | nucleus | 45.85 | 39.38 |
| Zm00001d028208_P009 | Maize | nucleus | 44.46 | 37.96 |
| HORVU4Hr1G067960.4 | Barley | endoplasmic reticulum, extracellular | 28.55 | 35.79 |
| Os03t0213900-02 | Rice | cytosol, nucleus | 19.9 | 30.03 |
Protein Annotations
| Gene3D:3.30.1370.10 | MapMan:35.1 | EntrezGene:822600 | ProteinID:AEE77580.1 | ArrayExpress:AT3G29390 | EnsemblPlantsGene:AT3G29390 |
| RefSeq:AT3G29390 | TAIR:AT3G29390 | RefSeq:AT3G29390-TAIR-G | EnsemblPlants:AT3G29390.1 | TAIR:AT3G29390.1 | EMBL:AY065141 |
| EMBL:AY081591 | EMBL:AY940684 | Unigene:At.21201 | ProteinID:BAB02585.1 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0008150 | InterPro:IPR036612 | InterPro:KH_dom_type_1_sf | RefSeq:NP_566850.3 | PO:PO:0000005 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001017 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020100 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 |
| UniProt:Q9LIA4 | Symbol:RIK | SUPFAM:SSF54791 | UniParc:UPI000034EFA3 | SEG:seg | : |
Description
RIKProtein RIK [Source:UniProtKB/Swiss-Prot;Acc:Q9LIA4]
Coordinates
chr3:+:11289613..11294774
Molecular Weight (calculated)
62538.7 Da
IEP (calculated)
9.097
GRAVY (calculated)
-0.510
Length
578 amino acids
Sequence
(BLAST)
(BLAST)
001: MTEDNDEARV PLSDSSTTND ASRTRQRRKR KWDKPAEQLV AAGVAFPQLL PLGNTMNVPS MSPLLQTLSV PLAVPKVNQP KIQDEVIIAR EIVINDAEAS
101: LRHRLTKRST QEDIQRSTGA VVITRGKYRP PNAPPDGEKP LYLHISAAAQ LQLKETTERI LAVDRAAAMI EEMMKQKSIS QIGSVGLQTV KMLSTCVYLG
201: FEADPSSNVA ARIRGPNDQY INHIMNETGA TVVLRGRGSG SLENQHGDEA QLPLHLLLSG SNPKSIDDAK RLAENLMDTI SVEFGASRVS SSKVYGAVPP
301: PQQLISGAPG SDQENQNLIS TYGLMTSIPI TAPPYAVSSF PVTPATSLYP QFPVMQSLGI SNGGPSQPVA GGTSYSGYAG IYPQATPLQQ VAQVLKQSIS
401: PVISTVPPTM LTATSLSIPS DNASNEMERR PPRKRKFQEL PADCKVPEKD KQQSELAMTG DVTPSANRVR SPPSPRSVMP PPPPKTIAPP PSKTMSPPSS
501: KSMLPPPPRS KTMSPLSSKS MLPPPPRFTL TTQRSRLQDN HISVKKPNPV PDTLIKLMEY GDDEDDDDDP DEPLTTRS
101: LRHRLTKRST QEDIQRSTGA VVITRGKYRP PNAPPDGEKP LYLHISAAAQ LQLKETTERI LAVDRAAAMI EEMMKQKSIS QIGSVGLQTV KMLSTCVYLG
201: FEADPSSNVA ARIRGPNDQY INHIMNETGA TVVLRGRGSG SLENQHGDEA QLPLHLLLSG SNPKSIDDAK RLAENLMDTI SVEFGASRVS SSKVYGAVPP
301: PQQLISGAPG SDQENQNLIS TYGLMTSIPI TAPPYAVSSF PVTPATSLYP QFPVMQSLGI SNGGPSQPVA GGTSYSGYAG IYPQATPLQQ VAQVLKQSIS
401: PVISTVPPTM LTATSLSIPS DNASNEMERR PPRKRKFQEL PADCKVPEKD KQQSELAMTG DVTPSANRVR SPPSPRSVMP PPPPKTIAPP PSKTMSPPSS
501: KSMLPPPPRS KTMSPLSSKS MLPPPPRFTL TTQRSRLQDN HISVKKPNPV PDTLIKLMEY GDDEDDDDDP DEPLTTRS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.