Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra030743.1-P | Field mustard | nucleus | 81.79 | 86.42 |
| CDY31125 | Canola | nucleus | 81.79 | 86.42 |
| CDY32135 | Canola | nucleus | 81.43 | 85.39 |
| PGSC0003DMT400072272 | Potato | nucleus | 57.86 | 59.56 |
| Solyc10g081490.1.1 | Tomato | nucleus | 56.79 | 58.89 |
| Bra018598.1-P | Field mustard | nucleus | 56.43 | 56.03 |
| GSMUA_Achr9P17050_001 | Banana | nucleus | 52.86 | 53.05 |
| GSMUA_Achr3P09450_001 | Banana | nucleus | 51.79 | 50.17 |
| GSMUA_Achr10P... | Banana | nucleus | 50.71 | 49.31 |
| GSMUA_Achr5P07720_001 | Banana | nucleus | 50.71 | 48.14 |
| VIT_08s0056g00800.t01 | Wine grape | nucleus | 55.0 | 47.98 |
| Os11t0128500-01 | Rice | nucleus | 51.79 | 47.08 |
| Os12t0125000-01 | Rice | nucleus | 52.14 | 46.95 |
| GSMUA_Achr10P... | Banana | nucleus | 47.86 | 46.85 |
| TraesCS4D01G123300.1 | Wheat | nucleus | 50.0 | 46.67 |
| Zm00001d023282_P001 | Maize | nucleus | 47.86 | 46.37 |
| HORVU4Hr1G023510.2 | Barley | nucleus | 49.64 | 46.03 |
| TraesCS4A01G189700.1 | Wheat | nucleus | 49.64 | 45.57 |
| TraesCS4B01G129100.1 | Wheat | nucleus | 48.93 | 45.51 |
| KRG94936 | Soybean | nucleus | 55.0 | 44.25 |
| KXG22874 | Sorghum | nucleus | 49.29 | 43.26 |
| AT3G28910.1 | Thale cress | nucleus | 49.64 | 43.03 |
| TraesCS5A01G142500.1 | Wheat | nucleus | 49.64 | 43.03 |
| KRH64960 | Soybean | nucleus | 54.64 | 42.5 |
| AT1G74650.1 | Thale cress | nucleus | 50.0 | 42.42 |
| AT3G47600.1 | Thale cress | nucleus | 50.36 | 42.34 |
| TraesCS5B01G141200.1 | Wheat | nucleus | 49.29 | 42.2 |
| HORVU5Hr1G045540.1 | Barley | nucleus | 48.93 | 41.9 |
| TraesCS5D01G149600.1 | Wheat | nucleus | 48.57 | 41.59 |
| Zm00001d052397_P001 | Maize | nucleus | 50.0 | 41.06 |
| KXG22875 | Sorghum | nucleus | 43.93 | 38.56 |
| HORVU5Hr1G045550.1 | Barley | nucleus | 48.93 | 37.85 |
| AT5G62470.2 | Thale cress | nucleus | 47.5 | 37.78 |
| OQU82780 | Sorghum | nucleus | 50.71 | 37.08 |
| Zm00001d023284_P001 | Maize | nucleus | 36.07 | 35.44 |
| Zm00001d023287_P001 | Maize | nucleus | 37.14 | 34.78 |
| AT2G37630.1 | Thale cress | nucleus | 20.0 | 15.26 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | EntrezGene:837403 | UniProt:A0A178WD25 | ProteinID:AEE28351.1 | EMBL:AK117469 |
| ArrayExpress:AT1G08810 | EnsemblPlantsGene:AT1G08810 | RefSeq:AT1G08810 | TAIR:AT1G08810 | RefSeq:AT1G08810-TAIR-G | EnsemblPlants:AT1G08810.1 |
| TAIR:AT1G08810.1 | EMBL:AY519551 | Unigene:At.10912 | EMBL:BT005074 | GO:GO:0000981 | GO:GO:0001135 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0006357 |
| GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009414 | GO:GO:0009416 |
| GO:GO:0009628 | GO:GO:0009719 | GO:GO:0009737 | GO:GO:0009751 | GO:GO:0009753 | GO:GO:0009987 |
| GO:GO:0010118 | GO:GO:0030154 | GO:GO:0043565 | GO:GO:0044212 | InterPro:Homeobox-like_sf | InterPro:IPR017930 |
| Symbol:MYB60 | InterPro:Myb_dom | RefSeq:NP_172358.1 | ProteinID:OAP16320.1 | PFAM:PF00249 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001185 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS51294 | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF726 | UniProt:Q8GYP5 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI000000C547 |
| SEG:seg | : | : | : | : | : |
Description
MYB60MYB60 [Source:UniProtKB/TrEMBL;Acc:A0A178WD25]
Coordinates
chr1:-:2819065..2820478
Molecular Weight (calculated)
32019.0 Da
IEP (calculated)
6.145
GRAVY (calculated)
-1.033
Length
280 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRPPCCDKI GIKKGPWTPE EDIILVSYIQ EHGPGNWRSV PTNTGLLRCS KSCRLRWTNY LRPGIKRGNF TPHEEGMIIH LQALLGNKWA SIASYLPQRT
101: DNDIKNYWNT HLKKKLNKSD SDERSRSENI ALQTSSTRNT INHRSTYASS TENISRLLEG WMRASPKSST STTFLEHKMQ NRTNNFIDHH SDQFPYEQLQ
201: GSWEEGHSKG INGDDDQGIK NSENNNGDDV HHEDGDHEDD DDHNATPPLT FIEKWLLEET STTGGQMEEM SHLMELSNML
101: DNDIKNYWNT HLKKKLNKSD SDERSRSENI ALQTSSTRNT INHRSTYASS TENISRLLEG WMRASPKSST STTFLEHKMQ NRTNNFIDHH SDQFPYEQLQ
201: GSWEEGHSKG INGDDDQGIK NSENNNGDDV HHEDGDHEDD DDHNATPPLT FIEKWLLEET STTGGQMEEM SHLMELSNML
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.