Factsheet for TraesCS4A01G189700.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G123300.1	Wheat	nucleus	93.44	95.0
TraesCS4B01G129100.1	Wheat	nucleus	93.44	94.68
HORVU4Hr1G023510.2	Barley	nucleus	90.16	91.06
CDX93535	Canola	nucleus	23.61	86.75
CDX95030	Canola	nucleus	30.82	82.46
Os11t0128500-01	Rice	nucleus	65.25	64.61
Os12t0125000-01	Rice	nucleus	64.59	63.34
KRH37834	Soybean	nucleus	21.97	56.78
Solyc10g081490.1.1	Tomato	nucleus	46.89	52.96
PGSC0003DMT400072272	Potato	nucleus	46.89	52.57
Bra030743.1-P	Field mustard	nucleus	45.25	52.08
CDY31125	Canola	nucleus	45.25	52.08
CDY32135	Canola	nucleus	44.59	50.94
AT1G08810.1	Thale cress	nucleus	45.57	49.64
TraesCS5A01G142500.1	Wheat	nucleus	50.82	47.99
Bra018598.1-P	Field mustard	nucleus	42.62	46.1
GSMUA_Achr7P21670_001	Banana	nucleus	42.3	44.64
Zm00001d052397_P001	Maize	nucleus	49.84	44.57
VIT_08s0056g00800.t01	Wine grape	nucleus	46.56	44.24
TraesCS4A01G322200.1	Wheat	nucleus	40.66	43.97
TraesCS5A01G227400.1	Wheat	nucleus	45.25	43.4
OQU82780	Sorghum	nucleus	51.15	40.73
TraesCS2A01G157600.1	Wheat	nucleus	40.66	39.49
GSMUA_Achr10P...	Banana	nucleus	39.02	37.78
TraesCS5A01G079100.1	Wheat	nucleus	19.67	17.49
CDX95031	Canola	nucleus, plastid	8.52	16.77

Protein Annotations

EnsemblPlants:TraesCS4A01G189700.1	EnsemblPlantsGene:TraesCS4A01G189700	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb	PANTHER:PTHR10641
PANTHER:PTHR10641:SF909	PFAM:PF00249	PFscan:PS51294	SEG:seg	SMART:SM00717	SUPFAM:SSF46689
TIGR:cd00167	MapMan:15.5.2.1	:	:	:	:

Description

No Description!

Coordinates

chr4A:+:468603186..468604307

Molecular Weight (calculated)

33494.3 Da

IEP (calculated)

7.092

GRAVY (calculated)

-0.599

Length

305 amino acids

Sequence
(BLAST)

001: MGRPPCCDKL GVKKGPWTPE EDIILVSYIQ EHGPGNWRSV PVSTGLMRCS KSCRLRWTNY LRTGIKRGNF TSHEEGVIVH LQSLLGNRWA AIASYLPRRT
101: DNDIKNYWNT HLKKKLRKQQ AMGATFAPPA SSSPGTAGDN FDHHNHHDMV SRADGYGAGQ AYMNKEVSQL IAGRGHSPFA DAAPEACSSS SYASSVDNIS
201: KLLGGFMKSS PPPPPPPPHN NYDADDVKPL LPLDSMSGTG SAELSFTASV QQPALMGGRV GYEYDDETKQ KQQHQAPLSS IEKWLFDEAA DLELSDECYS
301: VPMLF

Best Arabidopsis Sequence Match ( AT1G08810.1 )
(BLAST)

001: MGRPPCCDKI GIKKGPWTPE EDIILVSYIQ EHGPGNWRSV PTNTGLLRCS KSCRLRWTNY LRPGIKRGNF TPHEEGMIIH LQALLGNKWA SIASYLPQRT
101: DNDIKNYWNT HLKKKLNKSD SDERSRSENI ALQTSSTRNT INHRSTYASS TENISRLLEG WMRASPKSST STTFLEHKMQ NRTNNFIDHH SDQFPYEQLQ
201: GSWEEGHSKG INGDDDQGIK NSENNNGDDV HHEDGDHEDD DDHNATPPLT FIEKWLLEET STTGGQMEEM SHLMELSNML

Arabidopsis Description

MYB60MYB60 [Source:UniProtKB/TrEMBL;Acc:A0A178WD25]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.