Factsheet for TraesCS4D01G123300.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G129100.1	Wheat	nucleus	95.33	95.02
TraesCS4A01G189700.1	Wheat	nucleus	95.0	93.44
HORVU4Hr1G023510.2	Barley	nucleus	92.0	91.39
CDX93535	Canola	nucleus	24.33	87.95
CDX95030	Canola	nucleus	31.67	83.33
Os11t0128500-01	Rice	nucleus	66.0	64.29
Os12t0125000-01	Rice	nucleus	65.0	62.7
KRH37834	Soybean	nucleus	22.67	57.63
Solyc10g081490.1.1	Tomato	nucleus	47.67	52.96
PGSC0003DMT400072272	Potato	nucleus	47.67	52.57
Bra030743.1-P	Field mustard	nucleus	46.33	52.45
CDY31125	Canola	nucleus	46.33	52.45
CDY32135	Canola	nucleus	45.67	51.31
AT1G08810.1	Thale cress	nucleus	46.67	50.0
TraesCS5D01G149600.1	Wheat	nucleus	51.0	46.79
Bra018598.1-P	Field mustard	nucleus	43.67	46.45
GSMUA_Achr7P21670_001	Banana	nucleus	43.33	44.98
Zm00001d052397_P001	Maize	nucleus	50.67	44.57
TraesCS5D01G234800.1	Wheat	nucleus	46.67	44.03
VIT_08s0056g00800.t01	Wine grape	nucleus	47.0	43.93
TraesCS5D01G552200.1	Wheat	nucleus	40.67	43.26
OQU82780	Sorghum	nucleus	51.67	40.47
TraesCS2D01G163700.1	Wheat	nucleus	41.67	39.94
GSMUA_Achr10P...	Banana	nucleus	39.33	37.46
TraesCS5D01G093100.1	Wheat	mitochondrion, nucleus	20.33	16.9
CDX95031	Canola	nucleus, plastid	8.67	16.77

Protein Annotations

EnsemblPlants:TraesCS4D01G123300.1	EnsemblPlantsGene:TraesCS4D01G123300	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb	PANTHER:PTHR10641
PANTHER:PTHR10641:SF909	PFAM:PF00249	PFscan:PS51294	SEG:seg	SMART:SM00717	SUPFAM:SSF46689
TIGR:cd00167	MapMan:15.5.2.1	:	:	:	:

Description

No Description!

Coordinates

chr4D:-:107709718..107710734

Molecular Weight (calculated)

32900.7 Da

IEP (calculated)

6.900

GRAVY (calculated)

-0.497

Length

300 amino acids

Sequence
(BLAST)

001: MGRPPCCDKL GVKKGPWTPE EDIILVSYIQ EHGPGNWRSV PVSTGLMRCS KSCRLRWTNY LRPGIKRGNF TSHEEGVIVH LQSLLGNRWA AIASYLPRRT
101: DNDIKNYWNT HLKKKLRKQQ AMGAIFAPPA ASSPGTAGDS FDHQHHHDMV SRADGYGAGQ AYMNTEVSQL IAGRGHSPFA DAAAEVCSSS SYASSVDNIS
201: KLLGGFMKSS PPPPPHSNYD GDDVKPLLPL DSMSGTGSAE LSFTASVQQP ALMGGRVAYE YDHETKQQQQ APLSSIEKWL FDEAAELELS DECYSVPMLF

Best Arabidopsis Sequence Match ( AT1G08810.1 )
(BLAST)

001: MGRPPCCDKI GIKKGPWTPE EDIILVSYIQ EHGPGNWRSV PTNTGLLRCS KSCRLRWTNY LRPGIKRGNF TPHEEGMIIH LQALLGNKWA SIASYLPQRT
101: DNDIKNYWNT HLKKKLNKSD SDERSRSENI ALQTSSTRNT INHRSTYASS TENISRLLEG WMRASPKSST STTFLEHKMQ NRTNNFIDHH SDQFPYEQLQ
201: GSWEEGHSKG INGDDDQGIK NSENNNGDDV HHEDGDHEDD DDHNATPPLT FIEKWLLEET STTGGQMEEM SHLMELSNML

Arabidopsis Description

MYB60MYB60 [Source:UniProtKB/TrEMBL;Acc:A0A178WD25]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.