Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 6
- vacuole 6
- plasma membrane 5
- golgi 6
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX68161 | Canola | cytosol | 75.23 | 83.25 |
| CDX73122 | Canola | cytosol, golgi, nucleus | 66.06 | 81.36 |
| CDY45402 | Canola | cytosol, golgi, peroxisome | 68.35 | 80.98 |
| AT1G74890.1 | Thale cress | nucleus | 73.85 | 78.16 |
| CDY41014 | Canola | nucleus | 63.76 | 64.95 |
| CDX96681 | Canola | cytosol | 61.47 | 64.73 |
| CDX83788 | Canola | cytosol | 62.84 | 64.62 |
| CDY26701 | Canola | nucleus | 62.39 | 63.85 |
| CDY68129 | Canola | cytosol, nucleus, plastid | 51.83 | 63.13 |
| CDY54257 | Canola | cytosol, nucleus, peroxisome | 52.29 | 62.3 |
| CDY36905 | Canola | nucleus | 51.83 | 61.75 |
| CDY70164 | Canola | nucleus | 51.83 | 61.75 |
| CDY59856 | Canola | cytosol, nucleus, peroxisome | 50.46 | 60.11 |
| CDY21807 | Canola | cytosol, nucleus, peroxisome | 50.46 | 59.78 |
| CDY59626 | Canola | cytosol | 32.11 | 55.12 |
| CDX72141 | Canola | cytosol | 32.11 | 55.12 |
| CDY71200 | Canola | cytosol | 32.11 | 55.12 |
| CDY00336 | Canola | nucleus | 47.71 | 54.74 |
| CDX84366 | Canola | nucleus | 47.71 | 54.74 |
| Solyc03g113720.2.1 | Tomato | nucleus | 48.62 | 54.36 |
| CDX75990 | Canola | cytosol | 31.65 | 54.33 |
| CDY35445 | Canola | cytosol | 39.45 | 53.42 |
| CDY22469 | Canola | cytosol | 38.53 | 53.16 |
| KRH03376 | Soybean | nucleus | 50.46 | 53.14 |
| PGSC0003DMT400063187 | Potato | cytosol | 48.62 | 53.0 |
| KRH63457 | Soybean | cytosol | 48.62 | 51.96 |
| KRH57009 | Soybean | nucleus | 50.0 | 51.66 |
| KRH54462 | Soybean | cytosol | 47.71 | 50.98 |
| CDY65526 | Canola | cytosol | 34.86 | 48.1 |
| CDY27219 | Canola | cytosol, nucleus, plastid | 36.7 | 47.34 |
| VIT_17s0000g07580.t01 | Wine grape | cytosol, nucleus, plastid | 55.96 | 47.29 |
| CDY45155 | Canola | nucleus | 44.95 | 42.98 |
| CDY30913 | Canola | nucleus | 44.95 | 41.18 |
| CDY20630 | Canola | nucleus | 45.41 | 40.08 |
| CDY37975 | Canola | nucleus | 46.33 | 39.92 |
| CDY20948 | Canola | nucleus | 45.87 | 39.53 |
| CDX93424 | Canola | nucleus | 45.87 | 39.53 |
| CDY66046 | Canola | nucleus | 45.41 | 39.13 |
| CDX79942 | Canola | nucleus | 37.61 | 38.14 |
| CDY07801 | Canola | nucleus | 46.33 | 38.11 |
| CDY34890 | Canola | nucleus | 45.41 | 38.08 |
| CDY23856 | Canola | nucleus | 37.16 | 37.67 |
| CDY22518 | Canola | nucleus | 37.16 | 37.33 |
| CDY14761 | Canola | cytoskeleton, cytosol, nucleus | 37.61 | 36.94 |
| CDY35419 | Canola | nucleus | 36.24 | 36.57 |
| CDY06934 | Canola | cytosol | 37.16 | 36.49 |
| CDY06142 | Canola | cytosol | 37.16 | 34.32 |
| CDX76036 | Canola | nucleus | 35.32 | 34.22 |
| CDX72077 | Canola | cytosol | 36.7 | 34.04 |
| CDX67674 | Canola | cytosol | 35.78 | 33.33 |
| CDY30966 | Canola | cytosol | 34.86 | 32.76 |
Protein Annotations
| MapMan:11.4.2.5 | Gene3D:3.40.50.2300 | GO:A0A078D9E0 | EnsemblPlants:CDX85860 | ProteinID:CDX85860 | ProteinID:CDX85860.1 |
| InterPro:CheY-like_superfamily | GO:GO:0000160 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009987 |
| EnsemblPlantsGene:GSBRNA2T00143652001 | InterPro:IPR001789 | PFAM:PF00072 | PFscan:PS50110 | PANTHER:PTHR43874 | PANTHER:PTHR43874:SF17 |
| SMART:SM00448 | SUPFAM:SSF52172 | InterPro:Sig_transdc_resp-reg_receiver | SignalP:SignalP-noTM | UniParc:UPI0004EE4DC2 | SEG:seg |
Description
BnaC06g22740D
Coordinates
chrLK031843:-:356097..357435
Molecular Weight (calculated)
24266.9 Da
IEP (calculated)
4.733
GRAVY (calculated)
-0.150
Length
218 amino acids
Sequence
(BLAST)
(BLAST)
001: MFVSFFDVIY LTSLFFILLS VSQERTMAVG DLSSSSSSSS SQELHVLAVD DNFVDRKVIE RLLRISACKV TTVESGTRAL QYLGLDGDNG SSALKDLKVN
101: LIVTDYSMPG LTGYELLKKI KESSAFREIP VVIMSSENIQ PRIEQCMTEG AEDFLLKPVK LADVKRLTEL IMRSGEPQEE DKAKHSYPNR ILQNNTDSSS
201: SSHDYVSSVE MTLHLPSE
101: LIVTDYSMPG LTGYELLKKI KESSAFREIP VVIMSSENIQ PRIEQCMTEG AEDFLLKPVK LADVKRLTEL IMRSGEPQEE DKAKHSYPNR ILQNNTDSSS
201: SSHDYVSSVE MTLHLPSE
001: MALRDLSSSL SSSSSPELHV LAVDDSFVDR KVIERLLKIS ACKVTTVESG TRALQYLGLD GDNGSSGLKD LKVNLIVTDY SMPGLTGYEL LKKIKESSAL
101: REIPVVIMSS ENIQPRIEQC MIEGAEEFLL KPVKLADVKR LKELIMRGGE AEEGKTKKLS PKRILQNDID SSPSSSSTSS SSSSHDVSSL DDDTPSSKRI
201: KLESRG
101: REIPVVIMSS ENIQPRIEQC MIEGAEEFLL KPVKLADVKR LKELIMRGGE AEEGKTKKLS PKRILQNDID SSPSSSSTSS SSSSHDVSSL DDDTPSSKRI
201: KLESRG
Arabidopsis Description
ARR15Two-component response regulator ARR15 [Source:UniProtKB/Swiss-Prot;Acc:Q7G8V2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.