CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69927
CDX85268
CDX86370
CDY00096
CDY19286
CDY19992
CDY21561
CDY35134
CDY37282
CDY40008

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G57040.1	CDY35134	AT1G16970.1	18642946
AT3G57040.1	CDY40008	AT1G16970.1	18642946
AT3G57040.1	CDY19286	AT3G21510.1	10930573
AT3G57040.1	CDY37282	AT3G21510.1	10930573
AT3G57040.1	CDY19286	AT3G21510.1	16965536
AT3G57040.1	CDY37282	AT3G21510.1	16965536
AT3G57040.1	CDX85268	AT3G29350.1	10930573
AT3G57040.1	CDX86370	AT3G29350.1	10930573
AT3G57040.1	CDY00096	AT3G29350.1	10930573
AT3G57040.1	CDY19992	AT3G29350.1	10930573
AT3G57040.1	CDX85268	AT3G29350.1	16965536
AT3G57040.1	CDX86370	AT3G29350.1	16965536
AT3G57040.1	CDY00096	AT3G29350.1	16965536
AT3G57040.1	CDY19992	AT3G29350.1	16965536
AT3G57040.1	CDX85268	AT3G29350.1	18642946
AT3G57040.1	CDX86370	AT3G29350.1	18642946
AT3G57040.1	CDY00096	AT3G29350.1	18642946
AT3G57040.1	CDY19992	AT3G29350.1	18642946
AT3G57040.1	CDX85268	AT3G29350.1	21798944
AT3G57040.1	CDX86370	AT3G29350.1	21798944
AT3G57040.1	CDY00096	AT3G29350.1	21798944
AT3G57040.1	CDY19992	AT3G29350.1	21798944
AT3G57040.1	CDX69927	AT5G08720.1	18642946
AT3G57040.1	CDY21561	AT5G08720.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra007295.1-P	Field mustard	cytosol	97.03	97.03
CDX72077	Canola	cytosol	87.71	88.09
CDY65526	Canola	cytosol	56.78	84.81
CDY30966	Canola	cytosol	81.78	83.19
CDX76036	Canola	nucleus	78.81	82.67
CDX67674	Canola	cytosol	81.36	82.05
AT3G57040.1	Thale cress	nucleus	80.08	80.77
CDY06934	Canola	cytosol	67.8	72.07
CDY14761	Canola	cytoskeleton, cytosol, nucleus	67.8	72.07
CDY35419	Canola	nucleus	65.25	71.3
CDY23856	Canola	nucleus	63.98	70.23
CDX79942	Canola	nucleus	63.14	69.3
CDY22518	Canola	nucleus	63.56	69.12
PGSC0003DMT400076758	Potato	nucleus	62.29	65.04
PGSC0003DMT400076726	Potato	nucleus	60.59	63.27
PGSC0003DMT400007618	Potato	nucleus	56.36	62.15
Solyc10g079600.1.1	Tomato	nucleus	59.75	62.11
GSMUA_Achr3P08680_001	Banana	cytosol	48.73	60.85
VIT_08s0007g05390.t01	Wine grape	nucleus	55.93	60.55
GSMUA_Achr11P...	Banana	nucleus	47.46	60.54
Solyc10g079700.1.1	Tomato	nucleus	61.02	60.25
KRH66808	Soybean	nucleus	62.29	59.27
GSMUA_Achr11P...	Banana	nucleus	44.92	58.56
KRG95133	Soybean	nucleus	61.02	58.54
GSMUA_AchrUn_...	Banana	nucleus	49.58	58.5
GSMUA_Achr5P08230_001	Banana	nucleus	47.46	58.03
TraesCS4B01G178900.1	Wheat	cytosol	33.05	55.32
Os12t0139400-01	Rice	nucleus	47.03	55.22
Os11t0143300-02	Rice	cytosol	47.03	53.37
KXG27703	Sorghum	nucleus	45.34	52.97
Os01t0952500-01	Rice	cytosol	51.27	52.16
CDY71200	Canola	cytosol	27.54	51.18
CDY59626	Canola	cytosol	27.54	51.18
CDX75990	Canola	cytosol	27.54	51.18
CDX72141	Canola	cytosol	27.54	51.18
Zm00001d011849_P002	Maize	cytosol	50.42	51.07
TraesCS5B01G132900.2	Wheat	cytosol	48.73	49.57
EES02064	Sorghum	cytosol	51.27	49.39
TraesCS5D01G140200.1	Wheat	nucleus	48.31	49.35
CDY22469	Canola	cytosol	32.63	48.73
CDY68129	Canola	cytosol, nucleus, plastid	36.44	48.04
CDY35445	Canola	cytosol	32.63	47.83
CDY54257	Canola	cytosol, nucleus, peroxisome	36.86	47.54
TraesCS5A01G131600.2	Wheat	nucleus	47.46	47.06
CDY70164	Canola	nucleus	36.44	46.99
CDY36905	Canola	nucleus	36.44	46.99
CDX73122	Canola	cytosol, golgi, nucleus	35.17	46.89
CDY21807	Canola	cytosol, nucleus, peroxisome	36.44	46.74
TraesCS3B01G548600.1	Wheat	cytosol	47.46	46.67
CDY59856	Canola	cytosol, nucleus, peroxisome	36.02	46.45
CDY45402	Canola	cytosol, golgi, peroxisome	36.02	46.2
Zm00001d023242_P001	Maize	nucleus	26.69	45.32
HORVU5Hr1G043090.1	Barley	nucleus	46.61	45.08
CDY27219	Canola	cytosol, nucleus, plastid	31.78	44.38
CDX84366	Canola	nucleus	35.59	44.21
CDY00336	Canola	nucleus	35.59	44.21
HORVU3Hr1G108540.2	Barley	nucleus	46.19	43.95
CDX96681	Canola	cytosol	38.14	43.48
CDX83788	Canola	cytosol	38.14	42.45
CDY26701	Canola	nucleus	37.71	41.78
CDX68161	Canola	cytosol	34.75	41.62
TraesCS3D01G494600.1	Wheat	nucleus	47.03	41.26
Zm00001d052476_P001	Maize	nucleus	21.19	40.98
CDY45155	Canola	nucleus	39.41	40.79
CDY41014	Canola	nucleus	36.86	40.65
CDY30913	Canola	nucleus	39.41	39.08
KXG22820	Sorghum	endoplasmic reticulum	45.34	38.35
CDY20630	Canola	nucleus	39.83	38.06
GSMUA_Achr8P09640_001	Banana	cytosol	27.97	37.5
CDX85860	Canola	endoplasmic reticulum, golgi, vacuole	34.32	37.16
CDY20948	Canola	nucleus	39.83	37.15
CDX93424	Canola	nucleus	39.41	36.76
CDY37975	Canola	nucleus	39.41	36.76
CDY66046	Canola	nucleus	38.98	36.36
CDY34890	Canola	nucleus	39.83	36.15
CDY07801	Canola	nucleus	39.83	35.47

Protein Annotations

EnsemblPlants:CDY06142	EnsemblPlantsGene:GSBRNA2T00122028001	Gene3D:3.40.50.2300	GO:A0A078EYW4	GO:GO:0000160	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	InterPro:CheY-like_superfamily	InterPro:IPR001789	InterPro:Sig_transdc_resp-reg_receiver
PANTHER:PTHR43874	PANTHER:PTHR43874:SF26	PFAM:PF00072	PFscan:PS50110	ProteinID:CDY06142	ProteinID:CDY06142.1
SEG:seg	SMART:SM00448	SUPFAM:SSF52172	UniParc:UPI0004EE1AFC	MapMan:11.4.2.5	:

Description

BnaA09g36380D

Coordinates

chrLK031967:-:988569..990204

Molecular Weight (calculated)

26387.1 Da

IEP (calculated)

4.948

GRAVY (calculated)

-0.358

Length

236 amino acids

Sequence
(BLAST)

001: MGMAAAECQF HVLAVDDSLV DRKLIERLLQ KSSCQVTTVD SGYKALEFLG LRQGTESNDP TALSPSPQEV NLIITDYCMP GMTGYDLLKK LKESPAFKNI
101: PVVIMSSENV PARISRCLEE GAEEFFLKPV RLADLNKLKP HMMKTKLKNQ KLEEIITPSN DENGTVAAVE PEIKDSVEME IIKMLPIQSE TEPKRVLLQV
201: VQQEEQMLSN NKRKSMEEGL STDRPRPRLE GIATAV

Best Arabidopsis Sequence Match ( AT3G57040.1 )
(BLAST)

001: MGMAAESQFH VLAVDDSLFD RKLIERLLQK SSCQVTTVDS GSKALEFLGL RQSTDSNDPN AFSKAPVNHQ VVEVNLIITD YCMPGMTGYD LLKKVKESSA
101: FRDIPVVIMS SENVPARISR CLEEGAEEFF LKPVRLADLN KLKPHMMKTK LKNQKLEEIE TTSKVENGVP TAVADPEIKD STNIEIEILP LQQDLLLVQQ
201: EEQTLSINNK RKSVEEGIST DRARPRFDGI ATAV

Arabidopsis Description

ARR9Two-component response regulator ARR9 [Source:UniProtKB/Swiss-Prot;Acc:O80366]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.