Factsheet for TraesCS3D01G494600.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G353400.1
TraesCS5A01G051500.1
TraesCS5B01G057400.1
TraesCS5B01G520700.1
TraesCS5D01G062500.2
TraesCS5D01G519900.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G57040.1	TraesCS5A01G051500.1	AT1G16970.1	18642946
AT3G57040.1	TraesCS5B01G057400.1	AT1G16970.1	18642946
AT3G57040.1	TraesCS5D01G062500.2	AT1G16970.1	18642946
AT3G57040.1	TraesCS4A01G353400.1	AT5G08720.1	18642946
AT3G57040.1	TraesCS5B01G520700.1	AT5G08720.1	18642946
AT3G57040.1	TraesCS5D01G519900.1	AT5G08720.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G548600.1	Wheat	cytosol	76.95	86.25
HORVU3Hr1G108540.2	Barley	nucleus	78.07	84.68
TraesCS4B01G178900.1	Wheat	cytosol	43.49	82.98
Os01t0952500-01	Rice	cytosol	61.71	71.55
VIT_13s0067g03480.t01	Wine grape	cytosol	32.34	70.73
VIT_13s0067g03490.t01	Wine grape	nucleus	37.55	69.18
VIT_13s0067g03450.t01	Wine grape	cytosol	35.32	67.86
Zm00001d011849_P002	Maize	cytosol	56.88	65.67
EES02064	Sorghum	cytosol	58.74	64.49
CDY65526	Canola	cytosol	37.55	63.92
PGSC0003DMT400007977	Potato	nucleus	38.66	63.8
Solyc02g071220.2.1	Tomato	nucleus	38.66	62.65
GSMUA_Achr11P...	Banana	nucleus	42.01	61.08
GSMUA_Achr3P08680_001	Banana	cytosol	42.38	60.32
GSMUA_Achr5P08230_001	Banana	nucleus	43.12	60.1
KRH13391	Soybean	nucleus	39.03	58.66
TraesCS2D01G374300.1	Wheat	cytosol	29.37	58.52
GSMUA_AchrUn_...	Banana	nucleus	43.49	58.5
KRH20737	Soybean	nucleus	38.29	57.54
KRH30056	Soybean	nucleus	39.41	56.68
GSMUA_Achr11P...	Banana	nucleus	37.92	56.35
VIT_13s0067g03460.t01	Wine grape	nucleus	33.46	55.21
KRH62857	Soybean	nucleus	37.55	54.59
VIT_13s0067g03510.t01	Wine grape	nucleus	39.78	54.31
VIT_08s0007g05390.t01	Wine grape	nucleus	43.12	53.21
CDX79942	Canola	nucleus	42.38	53.02
Bra004615.1-P	Field mustard	nucleus	42.01	52.8
VIT_13s0067g03430.t01	Wine grape	nucleus	43.12	52.73
CDY23856	Canola	nucleus	42.01	52.56
CDY35419	Canola	nucleus	41.64	51.85
Bra000224.1-P	Field mustard	nucleus	41.64	51.85
CDY22518	Canola	nucleus	41.26	51.15
TraesCS6D01G213700.2	Wheat	plastid	27.51	50.0
AT2G41310.1	Thale cress	nucleus	41.26	49.33
PGSC0003DMT400076758	Potato	nucleus	41.26	49.12
Solyc10g079600.1.1	Tomato	nucleus	41.26	48.9
KRH66808	Soybean	nucleus	44.98	48.79
Bra016943.1-P	Field mustard	cytosol	40.15	48.65
CDY14761	Canola	cytoskeleton, cytosol, nucleus	40.15	48.65
CDY06934	Canola	cytosol	40.15	48.65
KRG95133	Soybean	nucleus	44.24	48.37
PGSC0003DMT400076726	Potato	nucleus	40.52	48.23
CDX72077	Canola	cytosol	42.01	48.09
TraesCS5D01G140200.1	Wheat	nucleus	41.26	48.05
AT3G57040.1	Thale cress	nucleus	41.64	47.86
PGSC0003DMT400007618	Potato	nucleus	37.92	47.66
Bra007295.1-P	Field mustard	cytosol	41.64	47.46
CDX76036	Canola	nucleus	39.41	47.11
CDY06142	Canola	cytosol	41.26	47.03
Solyc10g079700.1.1	Tomato	nucleus	41.64	46.86
CDX67674	Canola	cytosol	40.52	46.58
Bra014649.1-P	Field mustard	nucleus	39.78	45.73
CDY30966	Canola	cytosol	39.03	45.26
Bra003265.1-P	Field mustard	cytosol	40.15	45.0
TraesCS2D01G552200.1	Wheat	plastid	29.37	44.89
KRH18706	Soybean	nucleus	34.2	43.19
KRH64643	Soybean	nucleus	37.17	42.55
KRH53261	Soybean	nucleus	36.43	42.24
VIT_18s0001g02540.t01	Wine grape	nucleus	36.06	41.81
TraesCS6D01G401600.1	Wheat	plastid	29.74	41.24
AT2G07440.1	Thale cress	cytosol	18.22	36.03
TraesCS2D01G308000.1	Wheat	cytosol	27.14	33.18
GSMUA_Achr8P09640_001	Banana	cytosol	20.82	31.82

Protein Annotations

EnsemblPlants:TraesCS3D01G494600.1	EnsemblPlantsGene:TraesCS3D01G494600	GO:GO:0000160	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	InterPro:CheY-like_superfamily
InterPro:IPR001789	InterPro:Sig_transdc_resp-reg_receiver	PANTHER:PTHR43874	PANTHER:PTHR43874:SF31	PFAM:PF00072	PFscan:PS50110
SEG:seg	SMART:SM00448	SUPFAM:SSF52172	TIGR:cd00156	MapMan:11.4.2.5	:

Description

No Description!

Coordinates

chr3D:-:587201180..587203718

Molecular Weight (calculated)

28891.4 Da

IEP (calculated)

6.144

GRAVY (calculated)

-0.310

Length

269 amino acids

Sequence
(BLAST)

001: MTVVDAEARF HVLAVDDSVI DRKLIEMLLR TSSYQGAQPT SPRLLSPPLK FASSFLRCSF PNLTAGFCSW EPARAVTTVD SGSKALEVLG LRDEGDDSSS
101: SSPTSSSAPA HHQEVGVNLI ITDYCMPGMT GYDLLRRVKG SSSLKDIPVV IMSSENVPAR ISRCLEDGAE EFFLKPVKLA DMKKLKSHLV RRKQPQLQPP
201: QPQEKPQQQQ KAELAPTELV EEVAAEVTAT GITSDCGGGS RKRKAAMMEQ DGTTNASLSG GSGGLAVET

Best Arabidopsis Sequence Match ( AT2G41310.1 )
(BLAST)

001: MVMETESKFH VLAVDDSLFD RKMIERLLQK SSCQVTTVDS GSKALEFLGL RVDDNDPNAL STSPQIHQEV EINLIITDYC MPGMTGYDLL KKVKESAAFR
101: SIPVVIMSSE NVPARISRCL EEGAEEFFLK PVKLADLTKL KPHMMKTKLK KESEKPVAIE EIVVSKPEIE EEEEESSVIE ILPLHQEIES EQLEPMLSSN
201: KRKAMEEVVS TDRSRPKYND ITTSV

Arabidopsis Description

ARR8Two-component response regulator ARR8 [Source:UniProtKB/Swiss-Prot;Acc:O80365]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.