Factsheet for TraesCS5D01G519900.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3B01G548600.1
TraesCS3D01G494600.1
TraesCS4B01G178900.1
TraesCS5A01G131600.2
TraesCS5B01G132900.2
TraesCS5D01G140200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G08720.1	TraesCS3B01G548600.1	AT3G57040.1	18642946
AT5G08720.1	TraesCS3D01G494600.1	AT3G57040.1	18642946
AT5G08720.1	TraesCS4B01G178900.1	AT3G57040.1	18642946
AT5G08720.1	TraesCS5A01G131600.2	AT3G57040.1	18642946
AT5G08720.1	TraesCS5B01G132900.2	AT3G57040.1	18642946
AT5G08720.1	TraesCS5D01G140200.1	AT3G57040.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G353400.1	Wheat	plastid	92.45	96.54
TraesCS5B01G520700.1	Wheat	plastid	92.45	96.41
HORVU5Hr1G118480.8	Barley	mitochondrion	72.45	86.69
Os03t0837900-01	Rice	plastid	73.25	76.59
EER93131	Sorghum	plastid	69.14	72.8
Zm00001d034779_P001	Maize	plastid	68.48	69.77
PGSC0003DMT400037740	Potato	cytosol	55.23	64.65
Solyc05g009080.2.1	Tomato	nucleus	56.03	60.43
GSMUA_Achr6P18920_001	Banana	mitochondrion	57.62	60.33
PGSC0003DMT400031503	Potato	cytosol	29.67	59.89
AT5G08720.1	Thale cress	plastid	53.91	56.61
VIT_07s0031g02780.t01	Wine grape	plastid	55.1	56.6
KRH53975	Soybean	plastid	53.64	55.94
KRH40988	Soybean	nucleus	52.98	55.48
CDY21561	Canola	plastid	52.98	55.48
KRH59638	Soybean	plastid	53.24	55.45
Bra009364.1-P	Field mustard	plastid	52.98	55.25
KRH63959	Soybean	plastid	52.19	55.1
CDX69927	Canola	plastid	53.11	55.08
TraesCS3D01G529700.1	Wheat	plastid	7.55	20.88

Protein Annotations

Gene3D:3.30.530.20	MapMan:35.2	InterPro:COQ10_START	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009507	GO:GO:0009536	GO:GO:0009791	GO:GO:0009987	GO:GO:0010239	GO:GO:0010468
GO:GO:0031426	GO:GO:0042644	GO:GO:0048027	GO:GO:0048507	InterPro:IPR023393	PFAM:PF03364
PANTHER:PTHR34060	PANTHER:PTHR34060:SF2	SUPFAM:SSF55961	InterPro:START-like_dom_sf	EnsemblPlantsGene:TraesCS5D01G519900	EnsemblPlants:TraesCS5D01G519900.1
TIGR:cd08866	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr5D:-:540344025..540349748

Molecular Weight (calculated)

84703.1 Da

IEP (calculated)

9.378

GRAVY (calculated)

-0.489

Length

755 amino acids

Sequence
(BLAST)

001: MRALVSPAPA AAAFLPRTPS PGASPRGATA LSRHRSSSGG RAVAAGAAAT GDHWGADDQQ HHREQQQCRG GAGRGGTRRA GPSVQCDVDV VSWRERRVFA
101: SVAVAADVDT VWRIITDYER LADFVPNLVH RYAFPSRPPA RLGPFFTMGA PLKGSDLGEI SCSGRIPCPH EGRIWLEQRG LQQALYWHIE ARVVLDLREV
201: PDAVDGRELH FSMVDGDFKK FEGKWSVRAG PRSASAILLY EVNVIPRFNF PAIFLERIIR SDLPVNLTAL AFRSEKMYLE NHKFGPTKFT GAESKPLNLR
301: SATVENDVIS SSKFKEAPAS SGFGGVLASP PPELNGKWGV YGSVCRLDRP CVVDEIHLRR FDGLLEREGA HRCVVASITV KAPVREVWNA LTAYEKLPEI
401: IPNLAISRIL LRDNNKVRIL QEGCKGLLYM VLHARVVMDL REKHEREISF EQVEGDFYSF KGKWRLGQLG DQHTLLKYMV ETKMHKDTFL SESILEEVIY
501: EDLPSNLCAI RDYVEKAEAE RGNSTIHSDA PTNPDTVPLC YTEGRQSEQA SVHCSSSSTR QRPKVPGLQK DIEVLKSELG SFIAKHGQNG FMPKRKHLRT
601: HGRVDIEKAI TRMGGFRKIA TLMNLSLSYK NRKPRGYWDN LENLEEEIRR FQKNWGMDPS YMPSRKSFER AGRYDIARAL EKWGGIQEVS RLLSLEPRRP
701: RKQTDPDGEL QPESPSAADA TKHPSSSKAD KASVPLDAQK WLLKLKDLDI NWVEY

Best Arabidopsis Sequence Match ( AT5G08720.1 )
(BLAST)

001: MSVSKFPHLS HGVHTINFLN EPVFLSVLLP SPSRIRVFSS ISTSGIGGGV AKCHGTRHSG AGGRGDNGLR RDSGLGFDER GERKVRCEVD VISWRERRIR
101: GEIWVDSDSQ SVWNVLTDYE RLADFIPNLV WSGRIPCPHP GRIWLEQRGL QRALYWHIEA RVVLDLHECL DSPNGRELHF SMVDGDFKKF EGKWSVKSGI
201: RSVGTVLSYE VNVIPRFNFP AIFLERIIRS DLPVNLRAVA RQAEKIYKDC GKPSIIEDLL GIISSQPAPS NGIEFDSLAT ERSVASSVGS LAHSNELNNN
301: WGVYGKACKL DKPCTVDEVH LRRFDGLLEN GGVHRCAVAS ITVKAPVCEV WKVLTSYESL PEIVPNLAIS KILSRDNNKV RILQEGCKGL LYMVLHARAV
401: LDLHEIREQE IRFEQVEGDF DSLEGKWIFE QLGSHHTLLK YTVESKMRKD SFLSEAIMEE VIYEDLPSNL CAIRDYIEKR GEKSSESCKL ETCQVSEETC
501: SSSRAKSVET VYNNDDGSDQ TKQRRRIPGL QRDIEVLKSE ILKFISEHGQ EGFMPMRKQL RLHGRVDIEK AITRMGGFRR IALMMNLSLA YKHRKPKGYW
601: DNLENLQEEI GRFQQSWGMD PSFMPSRKSF ERAGRYDIAR ALEKWGGLHE VSRLLALNVR HPNRQLNSRK DNGNTILRTE STEADLNSTV NKNNKPYVSQ
701: DTEKWLYNLK DLDINWVQY

Arabidopsis Description

At5g08720 [Source:UniProtKB/TrEMBL;Acc:Q9C5A5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.