Factsheet for Solyc05g009080.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g113720.2.1
Solyc10g079600.1.1
Solyc10g079700.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G08720.1	Solyc03g113720.2.1	AT1G19050.1	18642946
AT5G08720.1	Solyc03g113720.2.1	AT1G74890.1	18642946
AT5G08720.1	Solyc03g113720.2.1	AT3G48100.1	18642946
AT5G08720.1	Solyc10g079600.1.1	AT3G57040.1	18642946
AT5G08720.1	Solyc10g079700.1.1	AT3G57040.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400037740	Potato	cytosol	89.71	97.36
PGSC0003DMT400031503	Potato	cytosol	46.14	86.36
VIT_07s0031g02780.t01	Wine grape	plastid	66.71	63.54
KRH40988	Soybean	nucleus	63.43	61.58
KRH59638	Soybean	plastid	63.57	61.38
AT5G08720.1	Thale cress	plastid	62.86	61.2
KRH53975	Soybean	plastid	63.29	61.19
KRH63959	Soybean	plastid	62.0	60.7
GSMUA_Achr6P18920_001	Banana	mitochondrion	62.29	60.47
CDY21561	Canola	plastid	61.57	59.78
Bra009364.1-P	Field mustard	plastid	61.57	59.53
CDX69927	Canola	plastid	61.86	59.48
HORVU5Hr1G118480.8	Barley	mitochondrion	52.86	58.64
Os03t0837900-01	Rice	plastid	60.29	58.45
TraesCS5B01G520700.1	Wheat	plastid	60.43	58.43
TraesCS4A01G353400.1	Wheat	plastid	60.29	58.37
EER93131	Sorghum	plastid	59.57	58.16
Zm00001d034779_P001	Maize	plastid	59.43	56.14
TraesCS5D01G519900.1	Wheat	plastid	60.43	56.03
Solyc01g068620.2.1	Tomato	nucleus	8.86	21.38

Protein Annotations

Gene3D:3.30.530.20	MapMan:35.2	InterPro:COQ10_START	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009507	GO:GO:0009536	GO:GO:0009791	GO:GO:0009987	GO:GO:0010239	GO:GO:0010468
GO:GO:0031426	GO:GO:0042644	GO:GO:0048027	GO:GO:0048507	InterPro:IPR023393	UniProt:K4BX82
PFAM:PF03364	PANTHER:PTHR34060	PANTHER:PTHR34060:SF2	SUPFAM:SSF55961	InterPro:START-like_dom_sf	EnsemblPlantsGene:Solyc05g009080.2
EnsemblPlants:Solyc05g009080.2.1	UniParc:UPI000276688C	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr5:-:3224482..3228671

Molecular Weight (calculated)

80846.4 Da

IEP (calculated)

7.969

GRAVY (calculated)

-0.494

Length

700 amino acids

Sequence
(BLAST)

001: MYSLHFHFTI KPKNYEINNK LSSICSWKSS FSSSDYVKFD SKNENFRIYY YRKGDFLGGD AMGVEKNVGC EVEVVSWRER KIKAEILVNA DVDSVWNALT
101: DYERLADFVP NLVSSRRIPC PRPGRIWLEQ RGIQRSLYWH IEARVVLDLQ EFIKSDNVRE LHFSMVDGDF KKFEGKWSVR VGTRSSTAIL SYEVSVIPRF
201: NFPAIFLERI IRSDLPVNLQ ALSCRAENSY QGYQNVTKEE PGSYLIDHVI SHENKSSGEH LKEKFVKATF GPSTPVTSDV TNNWGIFGKT CRLDKPCVVD
301: EVHLRRFDGL LENGGVHRCV VASITVKAPV REVWNVLTAY ESLPEIVPNL AISKILSRDN NKVRILQEGC KGLLYMVLHA RVVLDLSELI EQEISFEQVE
401: GDFDSFEGKW ILEQLGSHHT LLKYSVESKM HKNSFLSEAI MEEVIYEDLP SNLCAIRDYI EERETEKPLE KFNHDEFREA SVSSSMKDSS VHYDRQAGQN
501: SDSSSLHSPR QRPKVPGLQR DIEVLKAELL DFISEHGQEG FMPMRKQLRK HGRVDIEKAI TRMGGFRRIS SLMNLSLAYK HRKPKGYWDS LENLQEEISR
601: FQKNWGMDLS YMPSRKSFER AGRYDIARAL EKWGGLHEVS RLLSLKVRHP NRQASFAKEK KVELLANDVN CETTSSKPFV AQDAKKWLMK LKDLDINWVE

Best Arabidopsis Sequence Match ( AT5G08720.1 )
(BLAST)

001: MSVSKFPHLS HGVHTINFLN EPVFLSVLLP SPSRIRVFSS ISTSGIGGGV AKCHGTRHSG AGGRGDNGLR RDSGLGFDER GERKVRCEVD VISWRERRIR
101: GEIWVDSDSQ SVWNVLTDYE RLADFIPNLV WSGRIPCPHP GRIWLEQRGL QRALYWHIEA RVVLDLHECL DSPNGRELHF SMVDGDFKKF EGKWSVKSGI
201: RSVGTVLSYE VNVIPRFNFP AIFLERIIRS DLPVNLRAVA RQAEKIYKDC GKPSIIEDLL GIISSQPAPS NGIEFDSLAT ERSVASSVGS LAHSNELNNN
301: WGVYGKACKL DKPCTVDEVH LRRFDGLLEN GGVHRCAVAS ITVKAPVCEV WKVLTSYESL PEIVPNLAIS KILSRDNNKV RILQEGCKGL LYMVLHARAV
401: LDLHEIREQE IRFEQVEGDF DSLEGKWIFE QLGSHHTLLK YTVESKMRKD SFLSEAIMEE VIYEDLPSNL CAIRDYIEKR GEKSSESCKL ETCQVSEETC
501: SSSRAKSVET VYNNDDGSDQ TKQRRRIPGL QRDIEVLKSE ILKFISEHGQ EGFMPMRKQL RLHGRVDIEK AITRMGGFRR IALMMNLSLA YKHRKPKGYW
601: DNLENLQEEI GRFQQSWGMD PSFMPSRKSF ERAGRYDIAR ALEKWGGLHE VSRLLALNVR HPNRQLNSRK DNGNTILRTE STEADLNSTV NKNNKPYVSQ
701: DTEKWLYNLK DLDINWVQY

Arabidopsis Description

At5g08720 [Source:UniProtKB/TrEMBL;Acc:Q9C5A5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.