Factsheet for Zm00001d034779_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d011849_P002
Zm00001d023242_P001
Zm00001d052476_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G08720.1	Zm00001d011849_P002	AT3G57040.1	18642946
AT5G08720.1	Zm00001d023242_P001	AT3G57040.1	18642946
AT5G08720.1	Zm00001d052476_P001	AT3G57040.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER93131	Sorghum	plastid	86.5	89.4
Os03t0837900-01	Rice	plastid	70.04	71.88
TraesCS5B01G520700.1	Wheat	plastid	69.5	71.13
HORVU5Hr1G118480.8	Barley	mitochondrion	60.32	70.84
TraesCS4A01G353400.1	Wheat	plastid	68.69	70.4
TraesCS5D01G519900.1	Wheat	plastid	69.77	68.48
PGSC0003DMT400037740	Potato	cytosol	55.6	63.88
GSMUA_Achr6P18920_001	Banana	mitochondrion	58.43	60.06
PGSC0003DMT400031503	Potato	cytosol	30.09	59.63
Solyc05g009080.2.1	Tomato	nucleus	56.14	59.43
AT5G08720.1	Thale cress	plastid	54.93	56.61
CDY21561	Canola	plastid	54.66	56.17
KRH53975	Soybean	plastid	54.79	56.08
KRH59638	Soybean	plastid	54.52	55.72
Bra009364.1-P	Field mustard	plastid	54.39	55.66
CDX69927	Canola	plastid	54.66	55.63
VIT_07s0031g02780.t01	Wine grape	plastid	55.06	55.51
KRH63959	Soybean	plastid	53.44	55.38
KRH40988	Soybean	nucleus	53.85	55.34
Zm00001d041961_P001	Maize	plastid	6.75	17.3

Protein Annotations

Gene3D:3.30.530.20	MapMan:35.2	UniProt:A0A1D6LBB0	InterPro:COQ10_START	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0009791	GO:GO:0009987	GO:GO:0010239
GO:GO:0010468	GO:GO:0031426	GO:GO:0042644	GO:GO:0048027	GO:GO:0048507	InterPro:IPR023393
ProteinID:ONM11386.1	PFAM:PF03364	PANTHER:PTHR34060	PANTHER:PTHR34060:SF2	SUPFAM:SSF55961	InterPro:START-like_dom_sf
UniParc:UPI00084434D1	EnsemblPlantsGene:Zm00001d034779	EnsemblPlants:Zm00001d034779_P001	EnsemblPlants:Zm00001d034779_T001	SEG:seg	:

Description

No Description!

Coordinates

chr1:+:302131899..302140148

Molecular Weight (calculated)

83963.2 Da

IEP (calculated)

8.288

GRAVY (calculated)

-0.440

Length

741 amino acids

Sequence
(BLAST)

001: MKALASPAAS FLPGIPSPSH LARALPRSAA AALSRPPSGR SIAAAAAAAT GDHWGADHQH YHGGRAGASE AGPTASARGV KCDVDVVSWR ERRVLASVPV
101: AADVDTLWQV ITDYERLADF IPNLVQSVTI PCPHEGRIWL EQRGLQRALY WHIEARVVLD LQEIPDSING RELHFSMVDG DFKKFEGKWS IRSGPRSSSA
201: VLLYEVNVIP RFNFPAIFLE RIIRSDLPVN LRALACRAEK IYLENQGCGS RKFFVEDLKP SYTSQLNNFH STTVETSKFK QAPPRSGVSS VLPSPSSELI
301: SKWGVYGNIC RIDKPCVVDE IHLRRFDGML EHEGAHRCVF ASITVKAPVR EVWNVLTAYE NLPEFVPNLA ISRIVLRDNN KVRIMQEGCK GLLYMVLHAR
401: VVMDLREKHE QEISFEQVEG DFYTFKGKWR LEQLGDQHTL LKYMVETKMH RDTFLSESIL EELNALIKFN VFRDSKADCS FFMNLLQVIY EDLPSNLCAI
501: RDYIEKAGAK SSNSTGHSNV PTDPDPDVDH DESRQSEQTC VSCSSSTMKQ RPKVPGLQKD IEVLKSELDN FIAEYGQYGF MPKRKHLRSH GRVDIEKAIT
601: RMGGFRKIAS IMNLSLSYKN RKPRGYWDNL ENLQEEISRF QKIWGLDPSY MPSRKSFERA GRYDIARALE KWGGVQEVSR LLSLELRYPR RQADPDDERQ
701: SESPSGMMKK HGVKPDEGNV SPNAQKWLLK LKDLDVNWVE Y

Best Arabidopsis Sequence Match ( AT5G08720.1 )
(BLAST)

001: MSVSKFPHLS HGVHTINFLN EPVFLSVLLP SPSRIRVFSS ISTSGIGGGV AKCHGTRHSG AGGRGDNGLR RDSGLGFDER GERKVRCEVD VISWRERRIR
101: GEIWVDSDSQ SVWNVLTDYE RLADFIPNLV WSGRIPCPHP GRIWLEQRGL QRALYWHIEA RVVLDLHECL DSPNGRELHF SMVDGDFKKF EGKWSVKSGI
201: RSVGTVLSYE VNVIPRFNFP AIFLERIIRS DLPVNLRAVA RQAEKIYKDC GKPSIIEDLL GIISSQPAPS NGIEFDSLAT ERSVASSVGS LAHSNELNNN
301: WGVYGKACKL DKPCTVDEVH LRRFDGLLEN GGVHRCAVAS ITVKAPVCEV WKVLTSYESL PEIVPNLAIS KILSRDNNKV RILQEGCKGL LYMVLHARAV
401: LDLHEIREQE IRFEQVEGDF DSLEGKWIFE QLGSHHTLLK YTVESKMRKD SFLSEAIMEE VIYEDLPSNL CAIRDYIEKR GEKSSESCKL ETCQVSEETC
501: SSSRAKSVET VYNNDDGSDQ TKQRRRIPGL QRDIEVLKSE ILKFISEHGQ EGFMPMRKQL RLHGRVDIEK AITRMGGFRR IALMMNLSLA YKHRKPKGYW
601: DNLENLQEEI GRFQQSWGMD PSFMPSRKSF ERAGRYDIAR ALEKWGGLHE VSRLLALNVR HPNRQLNSRK DNGNTILRTE STEADLNSTV NKNNKPYVSQ
701: DTEKWLYNLK DLDINWVQY

Arabidopsis Description

At5g08720 [Source:UniProtKB/TrEMBL;Acc:Q9C5A5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.