Factsheet for TraesCS4A01G353400.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3B01G548600.1
TraesCS3D01G494600.1
TraesCS4B01G178900.1
TraesCS5A01G131600.2
TraesCS5B01G132900.2
TraesCS5D01G140200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G08720.1	TraesCS3B01G548600.1	AT3G57040.1	18642946
AT5G08720.1	TraesCS3D01G494600.1	AT3G57040.1	18642946
AT5G08720.1	TraesCS4B01G178900.1	AT3G57040.1	18642946
AT5G08720.1	TraesCS5A01G131600.2	AT3G57040.1	18642946
AT5G08720.1	TraesCS5B01G132900.2	AT3G57040.1	18642946
AT5G08720.1	TraesCS5D01G140200.1	AT3G57040.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G520700.1	Wheat	plastid	96.54	96.41
TraesCS5D01G519900.1	Wheat	plastid	96.54	92.45
HORVU5Hr1G118480.8	Barley	mitochondrion	74.41	85.26
Os03t0837900-01	Rice	plastid	75.8	75.9
EER93131	Sorghum	plastid	71.23	71.83
Zm00001d034779_P001	Maize	plastid	70.4	68.69
PGSC0003DMT400037740	Potato	cytosol	57.54	64.5
Solyc05g009080.2.1	Tomato	nucleus	58.37	60.29
GSMUA_Achr6P18920_001	Banana	mitochondrion	60.03	60.19
PGSC0003DMT400031503	Potato	cytosol	30.84	59.63
AT5G08720.1	Thale cress	plastid	56.29	56.61
KRH53975	Soybean	plastid	56.29	56.22
VIT_07s0031g02780.t01	Wine grape	plastid	56.85	55.92
KRH63959	Soybean	plastid	54.91	55.52
CDY21561	Canola	plastid	55.19	55.34
Bra009364.1-P	Field mustard	plastid	55.19	55.11
KRH40988	Soybean	nucleus	54.91	55.06
KRH59638	Soybean	plastid	55.19	55.03
CDX69927	Canola	plastid	55.33	54.95
TraesCS3A01G524400.1	Wheat	plastid	7.75	19.72
TraesCS3A01G524300.1	Wheat	cytosol	3.18	17.83

Protein Annotations

Gene3D:3.30.530.20	MapMan:35.2	InterPro:COQ10_START	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009507	GO:GO:0009536	GO:GO:0009791	GO:GO:0009987	GO:GO:0010239	GO:GO:0010468
GO:GO:0031426	GO:GO:0042644	GO:GO:0048027	GO:GO:0048507	InterPro:IPR023393	PFAM:PF03364
PANTHER:PTHR34060	PANTHER:PTHR34060:SF2	SUPFAM:SSF55961	InterPro:START-like_dom_sf	EnsemblPlantsGene:TraesCS4A01G353400	EnsemblPlants:TraesCS4A01G353400.1
TIGR:cd08866	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr4A:-:628490342..628495871

Molecular Weight (calculated)

81290.8 Da

IEP (calculated)

9.142

GRAVY (calculated)

-0.504

Length

723 amino acids

Sequence
(BLAST)

001: MRALVSPAPA AAAFLPRTPS PGASPRGATP ASRQRSSSGG RAVAAGAAAT GDHWGADDQQ HHREQQQYRG GAGRGGTRRA GPSVQCDVDV VSWRERRVFA
101: SVAVAADVDT VWRIITDYER LADFVPNLVH SGRIPCPHEG RIWLEQRGLQ QALYWHIEAR VVLDLREVPD AVDGRELHFS MVDGDFKKFE GKWSVRAGPR
201: SASAILLYEV NVIPRFNFPA IFLERIITSD LPVNLTALAF RSEKMYLENH KFGPTKFTGA ESKPLNLRSA TVENDVISSS KFKEAPASSG FGGVLASPPP
301: EVNGKWGVYG SVCRLDRPCV VDEIHLRRFD GLLEREGAHR CVVASITVKA PVREVWNALT AYEKLPEIIP NLAISRIILR DNNKVRILQE GCKGLLYMVL
401: HARVVMDLRE KLEREISFEQ VEGDFYSFKG KWRLEQLGDQ HTLLKYMVET KMHKDTFLSE SILEEVIYED LPSNLCAIRD YVEKAEAERG NSIIHSDAPT
501: NRDTVPMYYT EGRQPEQAPV HCSSTSTRQR SKVPGLQKDI EVLKSELGSF IAKHGQNGFM PKRKHLRTHG RVDIEKAITR MGGFRKIATL MNLSLSYKNR
601: KPRGYWDNLE NLQEEIGRFQ KNWGMDPSYM PSRKSFERAG RYDIARALEK WGGIQEVSRL LSLEPRRPRK QADPDGESQP ESPSAAAAEH HPSSSNADKA
701: SVPLDAQKWL LKLKDLDINW VEY

Best Arabidopsis Sequence Match ( AT5G08720.1 )
(BLAST)

001: MSVSKFPHLS HGVHTINFLN EPVFLSVLLP SPSRIRVFSS ISTSGIGGGV AKCHGTRHSG AGGRGDNGLR RDSGLGFDER GERKVRCEVD VISWRERRIR
101: GEIWVDSDSQ SVWNVLTDYE RLADFIPNLV WSGRIPCPHP GRIWLEQRGL QRALYWHIEA RVVLDLHECL DSPNGRELHF SMVDGDFKKF EGKWSVKSGI
201: RSVGTVLSYE VNVIPRFNFP AIFLERIIRS DLPVNLRAVA RQAEKIYKDC GKPSIIEDLL GIISSQPAPS NGIEFDSLAT ERSVASSVGS LAHSNELNNN
301: WGVYGKACKL DKPCTVDEVH LRRFDGLLEN GGVHRCAVAS ITVKAPVCEV WKVLTSYESL PEIVPNLAIS KILSRDNNKV RILQEGCKGL LYMVLHARAV
401: LDLHEIREQE IRFEQVEGDF DSLEGKWIFE QLGSHHTLLK YTVESKMRKD SFLSEAIMEE VIYEDLPSNL CAIRDYIEKR GEKSSESCKL ETCQVSEETC
501: SSSRAKSVET VYNNDDGSDQ TKQRRRIPGL QRDIEVLKSE ILKFISEHGQ EGFMPMRKQL RLHGRVDIEK AITRMGGFRR IALMMNLSLA YKHRKPKGYW
601: DNLENLQEEI GRFQQSWGMD PSFMPSRKSF ERAGRYDIAR ALEKWGGLHE VSRLLALNVR HPNRQLNSRK DNGNTILRTE STEADLNSTV NKNNKPYVSQ
701: DTEKWLYNLK DLDINWVQY

Arabidopsis Description

At5g08720 [Source:UniProtKB/TrEMBL;Acc:Q9C5A5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.