CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67674
CDX68161
CDX72077
CDX73122
CDX76036
CDX83788
CDX85860
CDX96681
CDY06142
CDY21807
CDY26701
CDY30966
CDY36905
CDY41014
CDY45402
CDY54257
CDY59856
CDY65526
CDY68129
CDY70164

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G08720.1	CDX83788	AT1G19050.1	18642946
AT5G08720.1	CDX96681	AT1G19050.1	18642946
AT5G08720.1	CDY26701	AT1G19050.1	18642946
AT5G08720.1	CDY41014	AT1G19050.1	18642946
AT5G08720.1	CDX68161	AT1G74890.1	18642946
AT5G08720.1	CDX73122	AT1G74890.1	18642946
AT5G08720.1	CDX85860	AT1G74890.1	18642946
AT5G08720.1	CDY45402	AT1G74890.1	18642946
AT5G08720.1	CDY21807	AT3G48100.1	18642946
AT5G08720.1	CDY36905	AT3G48100.1	18642946
AT5G08720.1	CDY54257	AT3G48100.1	18642946
AT5G08720.1	CDY59856	AT3G48100.1	18642946
AT5G08720.1	CDY68129	AT3G48100.1	18642946
AT5G08720.1	CDY70164	AT3G48100.1	18642946
AT5G08720.1	CDX67674	AT3G57040.1	18642946
AT5G08720.1	CDX72077	AT3G57040.1	18642946
AT5G08720.1	CDX76036	AT3G57040.1	18642946
AT5G08720.1	CDY06142	AT3G57040.1	18642946
AT5G08720.1	CDY30966	AT3G57040.1	18642946
AT5G08720.1	CDY65526	AT3G57040.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra009364.1-P	Field mustard	plastid	96.26	95.86
CDX69927	Canola	plastid	94.31	93.41
AT5G08720.1	Thale cress	plastid	82.94	83.17
PGSC0003DMT400037740	Potato	cytosol	59.5	66.51
Solyc05g009080.2.1	Tomato	nucleus	59.78	61.57
VIT_07s0031g02780.t01	Wine grape	plastid	62.55	61.36
PGSC0003DMT400031503	Potato	cytosol	31.76	61.23
KRH53975	Soybean	plastid	60.61	60.36
KRH59638	Soybean	plastid	60.06	59.72
KRH40988	Soybean	nucleus	59.36	59.36
KRH63959	Soybean	plastid	58.11	58.6
GSMUA_Achr6P18920_001	Banana	mitochondrion	58.11	58.11
EER93131	Sorghum	plastid	55.89	56.21
HORVU5Hr1G118480.8	Barley	mitochondrion	48.96	55.94
Os03t0837900-01	Rice	plastid	55.89	55.82
TraesCS5B01G520700.1	Wheat	plastid	55.62	55.39
TraesCS4A01G353400.1	Wheat	plastid	55.34	55.19
Zm00001d034779_P001	Maize	plastid	56.17	54.66
TraesCS5D01G519900.1	Wheat	plastid	55.48	52.98
CDX91843	Canola	plastid	8.88	22.46
CDY58222	Canola	plastid	9.15	21.43
CDX74389	Canola	plastid	8.46	21.4
CDY07128	Canola	plastid	8.46	21.03

Protein Annotations

EnsemblPlants:CDY21561	EnsemblPlantsGene:GSBRNA2T00016020001	Gene3D:3.30.530.20	InterPro:COQ10_START	InterPro:IPR023393	InterPro:START-like_dom_sf
PANTHER:PTHR34060	PANTHER:PTHR34060:SF2	PFAM:PF03364	ProteinID:CDY21561	ProteinID:CDY21561.1	SEG:seg
SUPFAM:SSF55961	UniParc:UPI0004EC8D9F	UniProt:A0A078G862	MapMan:35.2	:	:

Description

BnaC09g47310DBnaC09g47310D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G862]

Coordinates

chrLK032122:-:255870..259606

Molecular Weight (calculated)

82175.9 Da

IEP (calculated)

7.683

GRAVY (calculated)

-0.515

Length

721 amino acids

Sequence
(BLAST)

001: MSVSKLPLLS HGVQSINFAK EPAALSVLLP CPSRIRLFSP FFTTAIGGSG VVKCRGTRHS RGGEEGLRKE SFVEEDDDDE RGERKVRCEV DVISWRERRI
101: RGEIWVDSDS QSVWDVLTDY ERLADFIPNL VSSGRIPCPH PGRIWLEQRG LQRALYWHIE ARVVLDLHEC PDSPNGRELH FSMVDGDFKK FEGKWSVKSG
201: IRSVGAVLSY EVNVIPRFNF PAIFLERIIR SDLPVNLRAV ARQAEINYKA REKPSIIDAL LGRASVPSTP SHGVESESPV TERYAATSSV GSLSHSNELN
301: NNWGVYGKVC KLDKPCTVDE VHLRRFDGLL ENGGVHRCAV ASITVKAPVC EVWKVLTAYE SLPEIVPNLA ISKILSRENN KLRILQEGCK GLLYMVLHAR
401: AVLDLHETRE QEIRFEQVEG DFDSLEGKWI FEQLGNHHTL LKYTVESKMR RDTFLSEAIM EEVIYEDLPS NLCAIRDYIE KRGEKSSETC KVETCHVSEE
501: TCYSSRDTST ETVKDSNDCA DQTKQRARIP GLQRDIEVLK SEILKFISEH GQEGFMPMRK QLRSHGRVDI EKAITRMGGF RRIAVMMNLS LAYKYRKPKG
601: YWDNLENLQE EIGKFQQSWG MDPSFMPSRK TFERAGRYDI ARALEKWGGL HEVSRLLALN VRHPSRQLNS RKDNGGTTQR GESIDGDLNS TLSSKKNKPY
701: VSQDTEKWLY KLKDLDINWV Q

Best Arabidopsis Sequence Match ( AT5G08720.1 )
(BLAST)

001: MSVSKFPHLS HGVHTINFLN EPVFLSVLLP SPSRIRVFSS ISTSGIGGGV AKCHGTRHSG AGGRGDNGLR RDSGLGFDER GERKVRCEVD VISWRERRIR
101: GEIWVDSDSQ SVWNVLTDYE RLADFIPNLV WSGRIPCPHP GRIWLEQRGL QRALYWHIEA RVVLDLHECL DSPNGRELHF SMVDGDFKKF EGKWSVKSGI
201: RSVGTVLSYE VNVIPRFNFP AIFLERIIRS DLPVNLRAVA RQAEKIYKDC GKPSIIEDLL GIISSQPAPS NGIEFDSLAT ERSVASSVGS LAHSNELNNN
301: WGVYGKACKL DKPCTVDEVH LRRFDGLLEN GGVHRCAVAS ITVKAPVCEV WKVLTSYESL PEIVPNLAIS KILSRDNNKV RILQEGCKGL LYMVLHARAV
401: LDLHEIREQE IRFEQVEGDF DSLEGKWIFE QLGSHHTLLK YTVESKMRKD SFLSEAIMEE VIYEDLPSNL CAIRDYIEKR GEKSSESCKL ETCQVSEETC
501: SSSRAKSVET VYNNDDGSDQ TKQRRRIPGL QRDIEVLKSE ILKFISEHGQ EGFMPMRKQL RLHGRVDIEK AITRMGGFRR IALMMNLSLA YKHRKPKGYW
601: DNLENLQEEI GRFQQSWGMD PSFMPSRKSF ERAGRYDIAR ALEKWGGLHE VSRLLALNVR HPNRQLNSRK DNGNTILRTE STEADLNSTV NKNNKPYVSQ
701: DTEKWLYNLK DLDINWVQY

Arabidopsis Description

At5g08720 [Source:UniProtKB/TrEMBL;Acc:Q9C5A5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.