Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX96681 | Canola | cytosol | 96.23 | 98.55 |
| Bra016526.1-P | Field mustard | cytosol | 95.75 | 98.07 |
| CDY26701 | Canola | nucleus | 84.91 | 84.51 |
| AT1G19050.1 | Thale cress | cytosol | 81.6 | 83.98 |
| CDY41014 | Canola | nucleus | 84.43 | 83.64 |
| CDX73122 | Canola | cytosol, golgi, nucleus | 59.43 | 71.19 |
| CDY45402 | Canola | cytosol, golgi, peroxisome | 61.32 | 70.65 |
| CDX68161 | Canola | cytosol | 65.09 | 70.05 |
| CDY68129 | Canola | cytosol, nucleus, plastid | 53.77 | 63.69 |
| CDY54257 | Canola | cytosol, nucleus, peroxisome | 54.72 | 63.39 |
| CDY70164 | Canola | nucleus | 54.72 | 63.39 |
| CDY36905 | Canola | nucleus | 54.72 | 63.39 |
| CDY21807 | Canola | cytosol, nucleus, peroxisome | 54.72 | 63.04 |
| CDX85860 | Canola | endoplasmic reticulum, golgi, vacuole | 64.62 | 62.84 |
| CDY59856 | Canola | cytosol, nucleus, peroxisome | 53.77 | 62.3 |
| CDX84366 | Canola | nucleus | 55.66 | 62.11 |
| CDY00336 | Canola | nucleus | 55.66 | 62.11 |
| Solyc03g113720.2.1 | Tomato | nucleus | 52.83 | 57.44 |
| PGSC0003DMT400063187 | Potato | cytosol | 52.83 | 56.0 |
| KRH63457 | Soybean | cytosol | 53.77 | 55.88 |
| KRH57009 | Soybean | nucleus | 55.19 | 55.45 |
| KRH03376 | Soybean | nucleus | 53.77 | 55.07 |
| KRH54462 | Soybean | cytosol | 51.89 | 53.92 |
| CDY71200 | Canola | cytosol | 32.08 | 53.54 |
| CDY59626 | Canola | cytosol | 32.08 | 53.54 |
| CDX72141 | Canola | cytosol | 32.08 | 53.54 |
| CDY22469 | Canola | cytosol | 39.62 | 53.16 |
| CDX75990 | Canola | cytosol | 31.6 | 52.76 |
| CDY35445 | Canola | cytosol | 39.62 | 52.17 |
| CDY65526 | Canola | cytosol | 38.21 | 51.27 |
| CDY45155 | Canola | nucleus | 50.47 | 46.93 |
| CDY27219 | Canola | cytosol, nucleus, plastid | 37.26 | 46.75 |
| VIT_17s0000g07580.t01 | Wine grape | cytosol, nucleus, plastid | 56.6 | 46.51 |
| CDY30913 | Canola | nucleus | 50.47 | 44.96 |
| CDY20630 | Canola | nucleus | 51.42 | 44.13 |
| CDY37975 | Canola | nucleus | 51.89 | 43.48 |
| CDX93424 | Canola | nucleus | 51.89 | 43.48 |
| CDY23856 | Canola | nucleus | 43.87 | 43.26 |
| CDY20948 | Canola | nucleus | 51.42 | 43.08 |
| CDY22518 | Canola | nucleus | 43.87 | 42.86 |
| CDX79942 | Canola | nucleus | 43.4 | 42.79 |
| CDY66046 | Canola | nucleus | 50.94 | 42.69 |
| CDY35419 | Canola | nucleus | 43.4 | 42.59 |
| CDY34890 | Canola | nucleus | 51.42 | 41.92 |
| CDY07801 | Canola | nucleus | 51.89 | 41.51 |
| CDY14761 | Canola | cytoskeleton, cytosol, nucleus | 43.4 | 41.44 |
| CDY06934 | Canola | cytosol | 42.92 | 40.99 |
| CDX76036 | Canola | nucleus | 41.04 | 38.67 |
| CDX67674 | Canola | cytosol | 42.45 | 38.46 |
| CDX72077 | Canola | cytosol | 42.45 | 38.3 |
| CDY06142 | Canola | cytosol | 42.45 | 38.14 |
| CDY30966 | Canola | cytosol | 40.57 | 37.07 |
Protein Annotations
| EnsemblPlants:CDX83788 | EnsemblPlantsGene:GSBRNA2T00139535001 | Gene3D:3.40.50.2300 | GO:A0A078D8W8 | GO:GO:0000160 | GO:GO:0007154 |
| GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009987 | InterPro:CheY-like_superfamily | InterPro:IPR001789 | InterPro:Sig_transdc_resp-reg_receiver |
| PANTHER:PTHR43874 | PANTHER:PTHR43874:SF17 | PFAM:PF00072 | PFscan:PS50110 | ProteinID:CDX83788 | ProteinID:CDX83788.1 |
| SEG:seg | SMART:SM00448 | SUPFAM:SSF52172 | UniParc:UPI0004EBC050 | MapMan:11.4.2.5 | : |
Description
BnaC08g18570D
Coordinates
chrLK031834:+:461620..463258
Molecular Weight (calculated)
23334.9 Da
IEP (calculated)
5.738
GRAVY (calculated)
-0.304
Length
212 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVGEVMRME VPTGGDLTVS SPDLHVLAVD DSIVDRKVIE RLLRISSCKV TTVESGTRAL QYLGLDGNTG ASDLKDLKVN LIVTDYSMPG LTGYDLLKKI
101: KESSTFREIP VVIMSSENIL TRIEQCLKEG AEDFLLKPVK LADVKRIKQL IMRNEAEDHK TLSHSNKRKL GEDVDASPSS SSSSSSHDDS SVKDFPSSKR
201: MKSESDIFSP FI
101: KESSTFREIP VVIMSSENIL TRIEQCLKEG AEDFLLKPVK LADVKRIKQL IMRNEAEDHK TLSHSNKRKL GEDVDASPSS SSSSSSHDDS SVKDFPSSKR
201: MKSESDIFSP FI
001: MAVGEVMRME IPAGGDLTVT TPELHVLAVD DSIVDRKVIE RLLRISSCKV TTVESGTRAL QYLGLDGGKG ASNLKDLKVN LIVTDYSMPG LSGYDLLKKI
101: KESSAFREVP VVIMSSENIL PRIQECLKEG AEEFLLKPVK LADVKRIKQL IMRNEAEECK ILSHSNKRKL QEDSDTSSSS HDDTSIKDSS CSKRMKSESE
201: NLFSLL
101: KESSAFREVP VVIMSSENIL PRIQECLKEG AEEFLLKPVK LADVKRIKQL IMRNEAEECK ILSHSNKRKL QEDSDTSSSS HDDTSIKDSS CSKRMKSESE
201: NLFSLL
Arabidopsis Description
ARR7At1g19050 [Source:UniProtKB/TrEMBL;Acc:Q2HIJ6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.