CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX83788
CDX96681
CDY26701
CDY41014

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G79690.1	CDX83788	AT1G19050.1	18642946
AT1G79690.1	CDX96681	AT1G19050.1	18642946
AT1G79690.1	CDY26701	AT1G19050.1	18642946
AT1G79690.1	CDY41014	AT1G19050.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67981	Canola	cytosol	88.92	88.92
CDX79337	Canola	cytosol	88.53	88.53
AT1G79690.1	Thale cress	cytosol	86.6	87.05
CDX87361	Canola	cytosol	96.26	85.86
KRH18624	Soybean	nucleus	10.95	72.03
KRG89751	Soybean	extracellular	23.32	70.16
VIT_09s0018g01600.t01	Wine grape	cytosol	70.62	70.08
Solyc08g075390.2.1	Tomato	extracellular	68.56	67.94
KRH18626	Soybean	cytosol, nucleus	55.93	67.92
Os02t0793300-01	Rice	cytosol	67.01	67.01
TraesCS6A01G354100.2	Wheat	golgi, unclear	65.59	65.59
TraesCS6B01G387000.1	Wheat	cytosol	65.59	65.59
TraesCS6D01G336400.3	Wheat	cytosol	65.59	65.59
Zm00001d052050_P001	Maize	cytosol	64.3	63.16
OQU85861	Sorghum	mitochondrion	67.01	61.39
GSMUA_Achr10P...	Banana	cytosol	65.98	61.1
TraesCS5A01G366500.1	Wheat	cytosol	5.41	58.33
HORVU6Hr1G084590.1	Barley	plastid	65.21	57.11
Zm00001d018361_P001	Maize	plastid	4.38	33.33
TraesCS1D01G416700.1	Wheat	plastid	5.03	14.29

Protein Annotations

EnsemblPlants:CDX88559	EnsemblPlantsGene:GSBRNA2T00148121001	Gene3D:3.90.79.10	GO:A0A078DJ39	GO:GO:0003674	GO:GO:0003824
GO:GO:0016787	InterPro:IPR000086	InterPro:NUDIX_hydrolase-like_dom_sf	InterPro:NUDIX_hydrolase_dom	PANTHER:PTHR23422	PANTHER:PTHR23422:SF9
PFAM:PF00293	PFAM:PF03571	PFscan:PS51462	ProteinID:CDX88559	ProteinID:CDX88559.1	SEG:seg
SUPFAM:SSF55811	UniParc:UPI0004EF4389	MapMan:35.1	:	:	:

Description

BnaC06g40030D

Coordinates

chrLK031855:+:1637677..1642205

Molecular Weight (calculated)

88077.6 Da

IEP (calculated)

4.937

GRAVY (calculated)

-0.291

Length

776 amino acids

Sequence
(BLAST)

001: MVEEHFDVLT NSGEKTEVIW TIANVYVFPW KQSKVHRDGD YHRAVNVWIF VESTQELVLQ RRSDDKDSWP GRWDISSAGH ISAGDPSLIS AQRELEEELG
101: IKLPKDAFEK LFVFLQECVL NDGKFINNQF NDVYLVTVLH PIPLEAFTLQ KEEVSAVKYI PYEEYRNLLA KKDPGYVPYD LNGYGKLFHI IRQRCQVNTE
201: ARSLSLQKQL QRYSPVTLEA NLTELCEADQ KALGLIMKAA KVIDDIFYEQ LWHSNPALRD WLKEHADASE LDKLKWKYFL INKSPWSSLD ENEPYLSTAD
301: SAVKFIPEAT KRIDGWKGIE YRAAFPVTKP PGANFYPPDM DKMEFTSWLS SLTEEQKRAA TGFFSVIKRR SEANLDASLS DHLSDSNSDL YSIPYSEIYR
401: PFLTKASELL QKAGDLVTSQ SLKKLLHSKA EAFLSNDYYE SDIAWMDLDS KLDITIGPYE TYEDEIFGYK ASFEAFIGIK DDKATADLKL FGDNLKLLED
501: NLPLDSVYKS KDVSAAPIRV IQLIYNSGDV NGPQTVAFNL PNDEKIVKER GTSMVMLKNV QEAKFEHILK PIAEIIISKE QRGFVDFESF FTHTICHECC
601: HGIGPHSITL PDGRTSSVRK ELQDVYSAVE EAKADIVGLW ALMFLITKGL LSKSMEESMY VSFLAGCFRS IRFGLTEAHG KGQALQFNWL YEKGAFVFHE
701: DSTFSVDFTK IEDAVESLSR EILTIQGRGD KNAATLLLNK YCTITGPLKT ALEKLESVKV PVDITPTFPL ADALLN

Best Arabidopsis Sequence Match ( AT1G79690.1 )
(BLAST)

001: MAEEHFDVLT KSGEKTGVSK PRGEVHRDGD YHRAVHVWIF VETTQQLLLQ LRSDDKDSWP GQWDISSAGH ISAGDTSLLS AQRELEEELG VKLPKDAFEK
101: IFVFLQECVT NDGKFINNEF NDVYLVTILH PIPLEAFTLQ KEEVSAVKYV PYEEYRNFLS KEDPAYVPYD VNGEYGKLFD IIRQRCQVNT EARSLSLQKQ
201: LQRYSPVTLE AKLTELSEAD QKALGLIVKA AKIMDDIFYE QVWNSNPALR DWLKDHANAS KLDKLKWDYF TINKSPWSSL DENEAFLSTA DSAVKLLPGA
301: TKAIAGWKGL EYRAAFPVTK PPGANFYPPD MDKMEFTLWL NGLTEEQKHA ATGFFSVIKR RSEANLDASD HLASSTKKLP DSNSDLYSIP YSEIYRPFLK
401: KASEFLQKAG DLVSSPSLKK LLHSKAEAFL SNEYYESDIA WMDLDSKLDI TIGPYETYED EIFGYKATFE TFIGIRDDKA TADLKLFGDN LKLLEDNLPL
501: ESVYKSTDVS AAPIRVIQLI YNSGDVKGPQ TVAYNLPNDE KIVKDRGTSM VMLKNVQEAK FEHILKPIAE ITISKEQRGL VDFDSFFTHT ICHECCHGIG
601: PHTITLPGGQ TSTVRKELQE VHSAMEEAKA DIVGLWALKF LITKGLLSKS MVESMYVSFL AGCFRSIRFG LTEAHGKGQA LQFNYLYEKG AFVFHEDSTF
701: SVDFAKIEGA VESLSHEILT IQGKGDKNAA TLLLNKYCTI TGPLKTALEN LERVKVPVDI SPTFPLAEAL MN

Arabidopsis Description

NUDT3NUDT3 [Source:UniProtKB/TrEMBL;Acc:A0A178WDC8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.