CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
cytosol 5
mitochondrion 3
peroxisome 1

Predictors

GFP

MS/MS

Papers

nucleus: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH03376
KRH54462
KRH57009
KRH63457

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G79690.1	KRH03376	AT1G19050.1	18642946
AT1G79690.1	KRH54462	AT1G19050.1	18642946
AT1G79690.1	KRH57009	AT1G19050.1	18642946
AT1G79690.1	KRH63457	AT1G19050.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG89751	Soybean	extracellular	66.1	30.23
VIT_09s0018g01600.t01	Wine grape	cytosol	73.73	11.13
Bra035136.1-P	Field mustard	cytosol	72.03	10.98
CDX88559	Canola	cytosol	72.03	10.95
Os02t0793300-01	Rice	cytosol	72.03	10.95
AT1G79690.1	Thale cress	cytosol	70.34	10.75
Zm00001d052050_P001	Maize	cytosol	71.19	10.63
Solyc08g075390.2.1	Tomato	extracellular	69.49	10.47
TraesCS6D01G336400.3	Wheat	cytosol	68.64	10.44
TraesCS6B01G387000.1	Wheat	cytosol	68.64	10.44
TraesCS6A01G354100.2	Wheat	golgi, unclear	68.64	10.44
Bra003597.1-P	Field mustard	cytosol	66.95	10.42
CDX79337	Canola	cytosol	67.8	10.31
CDX67981	Canola	cytosol	66.95	10.18
OQU85861	Sorghum	mitochondrion	72.03	10.04
CDX87361	Canola	cytosol	72.03	9.77
GSMUA_Achr10P...	Banana	cytosol	67.8	9.55
HORVU6Hr1G084590.1	Barley	plastid	68.64	9.14
TraesCS1D01G416700.1	Wheat	plastid	9.32	4.03
KRH18626	Soybean	cytosol, nucleus	0.85	0.16
TraesCS5A01G366500.1	Wheat	cytosol	0.0	0.0
Zm00001d018361_P001	Maize	plastid	0.0	0.0

Protein Annotations

EMBL:ACUP02008105	EnsemblPlants:KRH18624	EnsemblPlantsGene:GLYMA_13G072300	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152
GO:GO:0008239	GO:GO:0016787	GO:GO:0019538	PANTHER:PTHR23422	PANTHER:PTHR23422:SF9	ProteinID:KRH18624
ProteinID:KRH18624.1	UniParc:UPI00023D14F3	UniProt:I1LWC8	MapMan:35.1	:	:

Description

hypothetical protein

Coordinates

chr13:-:17324616..17326657

Molecular Weight (calculated)

13064.8 Da

IEP (calculated)

4.861

GRAVY (calculated)

0.108

Length

118 amino acids

Sequence
(BLAST)

001: MYVSFLAGCF RSVRFGLEEA HGKGQALQFN WLYEKGAFVW DSEGKVSVDF TKIEGAVESL SREILTIQAN GDKETAGLLL LKYCVLTEPL KVALKNLEDI
101: QVPVDVAPTF PIGNKILQ

Best Arabidopsis Sequence Match ( AT1G79690.1 )
(BLAST)

001: MAEEHFDVLT KSGEKTGVSK PRGEVHRDGD YHRAVHVWIF VETTQQLLLQ LRSDDKDSWP GQWDISSAGH ISAGDTSLLS AQRELEEELG VKLPKDAFEK
101: IFVFLQECVT NDGKFINNEF NDVYLVTILH PIPLEAFTLQ KEEVSAVKYV PYEEYRNFLS KEDPAYVPYD VNGEYGKLFD IIRQRCQVNT EARSLSLQKQ
201: LQRYSPVTLE AKLTELSEAD QKALGLIVKA AKIMDDIFYE QVWNSNPALR DWLKDHANAS KLDKLKWDYF TINKSPWSSL DENEAFLSTA DSAVKLLPGA
301: TKAIAGWKGL EYRAAFPVTK PPGANFYPPD MDKMEFTLWL NGLTEEQKHA ATGFFSVIKR RSEANLDASD HLASSTKKLP DSNSDLYSIP YSEIYRPFLK
401: KASEFLQKAG DLVSSPSLKK LLHSKAEAFL SNEYYESDIA WMDLDSKLDI TIGPYETYED EIFGYKATFE TFIGIRDDKA TADLKLFGDN LKLLEDNLPL
501: ESVYKSTDVS AAPIRVIQLI YNSGDVKGPQ TVAYNLPNDE KIVKDRGTSM VMLKNVQEAK FEHILKPIAE ITISKEQRGL VDFDSFFTHT ICHECCHGIG
601: PHTITLPGGQ TSTVRKELQE VHSAMEEAKA DIVGLWALKF LITKGLLSKS MVESMYVSFL AGCFRSIRFG LTEAHGKGQA LQFNYLYEKG AFVFHEDSTF
701: SVDFAKIEGA VESLSHEILT IQGKGDKNAA TLLLNKYCTI TGPLKTALEN LERVKVPVDI SPTFPLAEAL MN

Arabidopsis Description

NUDT3NUDT3 [Source:UniProtKB/TrEMBL;Acc:A0A178WDC8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.