CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, mitochondrion
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH03376
KRH54462
KRH57009
KRH63457

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G79690.1	KRH03376	AT1G19050.1	18642946
AT1G79690.1	KRH54462	AT1G19050.1	18642946
AT1G79690.1	KRH57009	AT1G19050.1	18642946
AT1G79690.1	KRH63457	AT1G19050.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G366500.1	Wheat	cytosol	7.36	65.28
Solyc08g075390.2.1	Tomato	extracellular	76.06	62.07
VIT_09s0018g01600.t01	Wine grape	cytosol	75.43	61.64
Bra003597.1-P	Field mustard	cytosol	68.7	57.92
CDX67981	Canola	cytosol	70.27	57.86
AT1G79690.1	Thale cress	cytosol	69.48	57.51
CDX79337	Canola	cytosol	69.33	57.09
TraesCS6D01G336400.3	Wheat	cytosol	68.86	56.7
TraesCS6B01G387000.1	Wheat	cytosol	68.86	56.7
TraesCS6A01G354100.2	Wheat	golgi, unclear	68.86	56.7
Os02t0793300-01	Rice	cytosol	68.08	56.06
CDX88559	Canola	cytosol	67.92	55.93
Bra035136.1-P	Field mustard	cytosol	67.61	55.81
GSMUA_Achr10P...	Banana	cytosol	69.64	53.1
Zm00001d052050_P001	Maize	cytosol	65.57	53.04
OQU85861	Sorghum	mitochondrion	68.54	51.71
CDX87361	Canola	cytosol	67.76	49.77
HORVU6Hr1G084590.1	Barley	plastid	67.45	48.65
KRG89751	Soybean	extracellular	18.15	44.96
Zm00001d018361_P001	Maize	plastid	5.79	36.27
TraesCS1D01G416700.1	Wheat	plastid	5.01	11.72
KRH18624	Soybean	nucleus	0.16	0.85

Protein Annotations

Gene3D:3.90.79.10	MapMan:35.1	UniProt:A0A0R0GRC9	EMBL:ACUP02008106	EnsemblPlantsGene:GLYMA_13G072500	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006508
GO:GO:0008150	GO:GO:0008152	GO:GO:0008239	GO:GO:0016787	GO:GO:0019538	InterPro:IPR000086
EnsemblPlants:KRH18626	ProteinID:KRH18626	ProteinID:KRH18626.1	InterPro:NUDIX_hydrolase-like_dom_sf	InterPro:NUDIX_hydrolase_dom	PFAM:PF00293
PFAM:PF03571	PFscan:PS51462	PANTHER:PTHR23422	PANTHER:PTHR23422:SF9	SUPFAM:SSF55811	UniParc:UPI0006EDCC74

Description

hypothetical protein

Coordinates

chr13:-:17356319..17367752

Molecular Weight (calculated)

72600.7 Da

IEP (calculated)

4.892

GRAVY (calculated)

-0.344

Length

639 amino acids

Sequence
(BLAST)

001: MQQAEEHLDV LTKTGLKTGV SKPRGDVHRD GDYHRAVHVW IFAESTRELL LQRRASCKDS WPDLWDISSA GHISAGDSSL TSARRELEEE LGITLPKDAF
101: ELIFVFLQEC VINDGKYINN EYNDVYLVTT LDPIPLEAFV LQETEVSAVK YISYEEYKRL LAKEDSGYVP YDVNGQYGQL FDIIEKRYKE NTVARSLTLQ
201: KQISRYAPIS LSAELTGLTD SDKEALVFVV KAANVMDEIF YLQAWYSNPS LRDWLKEHAD TSEFNKLKWS YYQINKSPWS SLDEDEAFLS TADSAIRLLS
301: KATRIVKDWK GLEYRAAFPL LKPAGANFYP PDMDKMEFEL WKDSLEKHEQ KEATGFFSVI KRHSEFILDS HLSDNKTGSH DLYIVPYSEE YKSLLAKASD
401: LLHKAGDISD SPGLKRLLHS KADAFLSNDY YDSDIAWMEL DSKLDVTIGP YETYEDKLFG YKATFEAYIG IRDDEATAQL KLFGDNLLLL EQNLPMDSAY
501: KSEDVNAAPI RVIQLLYNAG DVKGPQTLAF NLPNDERIVK DRGSSMVMLK NVSEAKFKHI LLPIAAACVA NDQQEHVDFE SFFTHTICHE CCHGIGPHTI
601: TLPNGQKSTV RLVSSTIYFT REISLIAKTF AVNLIIKDT

Best Arabidopsis Sequence Match ( AT1G79690.1 )
(BLAST)

001: MAEEHFDVLT KSGEKTGVSK PRGEVHRDGD YHRAVHVWIF VETTQQLLLQ LRSDDKDSWP GQWDISSAGH ISAGDTSLLS AQRELEEELG VKLPKDAFEK
101: IFVFLQECVT NDGKFINNEF NDVYLVTILH PIPLEAFTLQ KEEVSAVKYV PYEEYRNFLS KEDPAYVPYD VNGEYGKLFD IIRQRCQVNT EARSLSLQKQ
201: LQRYSPVTLE AKLTELSEAD QKALGLIVKA AKIMDDIFYE QVWNSNPALR DWLKDHANAS KLDKLKWDYF TINKSPWSSL DENEAFLSTA DSAVKLLPGA
301: TKAIAGWKGL EYRAAFPVTK PPGANFYPPD MDKMEFTLWL NGLTEEQKHA ATGFFSVIKR RSEANLDASD HLASSTKKLP DSNSDLYSIP YSEIYRPFLK
401: KASEFLQKAG DLVSSPSLKK LLHSKAEAFL SNEYYESDIA WMDLDSKLDI TIGPYETYED EIFGYKATFE TFIGIRDDKA TADLKLFGDN LKLLEDNLPL
501: ESVYKSTDVS AAPIRVIQLI YNSGDVKGPQ TVAYNLPNDE KIVKDRGTSM VMLKNVQEAK FEHILKPIAE ITISKEQRGL VDFDSFFTHT ICHECCHGIG
601: PHTITLPGGQ TSTVRKELQE VHSAMEEAKA DIVGLWALKF LITKGLLSKS MVESMYVSFL AGCFRSIRFG LTEAHGKGQA LQFNYLYEKG AFVFHEDSTF
701: SVDFAKIEGA VESLSHEILT IQGKGDKNAA TLLLNKYCTI TGPLKTALEN LERVKVPVDI SPTFPLAEAL MN

Arabidopsis Description

NUDT3NUDT3 [Source:UniProtKB/TrEMBL;Acc:A0A178WDC8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.