Factsheet for VIT_09s0018g01600.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_17s0000g07580.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G79690.1	VIT_17s0000g07580.t01	AT1G19050.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g075390.2.1	Tomato	extracellular	77.62	77.52
KRG89751	Soybean	extracellular	25.19	76.36
KRH18626	Soybean	cytosol, nucleus	61.64	75.43
KRH18624	Soybean	nucleus	11.13	73.73
AT1G79690.1	Thale cress	cytosol	71.87	72.8
Bra003597.1-P	Field mustard	cytosol	70.33	72.56
CDX79337	Canola	cytosol	71.74	72.29
CDX67981	Canola	cytosol	71.74	72.29
CDX88559	Canola	cytosol	70.08	70.62
Bra035136.1-P	Field mustard	cytosol	69.57	70.28
TraesCS6B01G387000.1	Wheat	cytosol	69.69	70.23
TraesCS6A01G354100.2	Wheat	golgi, unclear	69.57	70.1
TraesCS6D01G336400.3	Wheat	cytosol	69.57	70.1
Os02t0793300-01	Rice	cytosol	69.31	69.85
GSMUA_Achr10P...	Banana	cytosol	72.51	67.66
Zm00001d052050_P001	Maize	cytosol	67.01	66.33
TraesCS5A01G366500.1	Wheat	cytosol	6.01	65.28
OQU85861	Sorghum	mitochondrion	69.31	63.99
CDX87361	Canola	cytosol	69.69	62.64
HORVU6Hr1G084590.1	Barley	plastid	68.29	60.27
Zm00001d018361_P001	Maize	plastid	4.86	37.25
TraesCS1D01G416700.1	Wheat	plastid	6.39	18.32

Protein Annotations

EntrezGene:100241564	wikigene:100241564	Gene3D:3.90.79.10	MapMan:35.1	ProteinID:CCB49716	ProteinID:CCB49716.1
ncoils:Coil	UniProt:F6HBY3	EMBL:FN595513	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152
GO:GO:0008239	GO:GO:0016787	GO:GO:0019538	InterPro:IPR000086	EntrezGene:LOC100241564	wikigene:LOC100241564
InterPro:NUDIX_hydrolase-like_dom_sf	InterPro:NUDIX_hydrolase_dom	PFAM:PF00293	PFAM:PF03571	PFscan:PS51462	PANTHER:PTHR23422
PANTHER:PTHR23422:SF9	SUPFAM:SSF55811	UniParc:UPI0001983F68	ArrayExpress:VIT_09s0018g01600	EnsemblPlantsGene:VIT_09s0018g01600	EnsemblPlants:VIT_09s0018g01600.t01
unigene:Vvi.15067	RefSeq:XP_002271902	RefSeq:XP_002271902.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr9:+:18744638..18788415

Molecular Weight (calculated)

88432.8 Da

IEP (calculated)

5.102

GRAVY (calculated)

-0.232

Length

782 amino acids

Sequence
(BLAST)

001: MAEPLLHEEH FDVLTKTGQR TGLSKPRGDV HRDGDYHAAV HVWIFSESTQ ELLLQRRADC KDSWPGLWDI SSAGHISAGD SSLITARREL HEELGVILPK
101: DAFEFLFVFL QECVINDGKF INNEFNDVYL VTTLAPIPLE AFTLQESEVS AVKYISCEEY KRLLAKEDPE YVPYDVNGKY GQLFDIIAQR YKENMEERSL
201: TLQKQLRRYV PISLEAEMTG VTDADKKALV LLVQAATIID DIFNLQVWYS NPILKDWLKE HADTSHLDKL KWMYYLINKS PWSCLDENKA FLTTADSAVK
301: LLPEATKSIT GWKGLEYRAA FPLMKPPGAN FYPPDMDKME FELWKGSLAK DKQEDATGFF SVIRRHGEFM LDASLSNNTV EGTDDLVGST HDLYSIPFSQ
401: EYKPFLKKAA ELLHKAGDLT DSPSLKRLLH SKADAFLSNE YIDSDIAWME LDSKLDVTIG PYETYEDTLF GYKATFEAFI GVRDDHATAQ LKLFGDNLQV
501: LEQNLPMDDV YKSKEVIAAP IRVIQLVYNA GDVKGPQTVA FNLPNDERIV KDRGTSMVML KNVSEAKFKN ILRPIAEACI TKEQQKYVDF ESFFTHTICH
601: ECCHGIGPHT IILPNGQKST VRLELQELHS SLEEAKADIV GLWALRFLIG QDLLSKSLLK SMYVSFLAGC FRSVRFGLEE AHGKGQALQF NWVFEKGGFI
701: LHPDETFSVD FAKIEGAVES LSREILTIQA KGDKPAAYAL LEKYAKMTQP LRVALEKLEN IQVPVDIAPR FPIADKILGK IG

Best Arabidopsis Sequence Match ( AT1G79690.1 )
(BLAST)

001: MAEEHFDVLT KSGEKTGVSK PRGEVHRDGD YHRAVHVWIF VETTQQLLLQ LRSDDKDSWP GQWDISSAGH ISAGDTSLLS AQRELEEELG VKLPKDAFEK
101: IFVFLQECVT NDGKFINNEF NDVYLVTILH PIPLEAFTLQ KEEVSAVKYV PYEEYRNFLS KEDPAYVPYD VNGEYGKLFD IIRQRCQVNT EARSLSLQKQ
201: LQRYSPVTLE AKLTELSEAD QKALGLIVKA AKIMDDIFYE QVWNSNPALR DWLKDHANAS KLDKLKWDYF TINKSPWSSL DENEAFLSTA DSAVKLLPGA
301: TKAIAGWKGL EYRAAFPVTK PPGANFYPPD MDKMEFTLWL NGLTEEQKHA ATGFFSVIKR RSEANLDASD HLASSTKKLP DSNSDLYSIP YSEIYRPFLK
401: KASEFLQKAG DLVSSPSLKK LLHSKAEAFL SNEYYESDIA WMDLDSKLDI TIGPYETYED EIFGYKATFE TFIGIRDDKA TADLKLFGDN LKLLEDNLPL
501: ESVYKSTDVS AAPIRVIQLI YNSGDVKGPQ TVAYNLPNDE KIVKDRGTSM VMLKNVQEAK FEHILKPIAE ITISKEQRGL VDFDSFFTHT ICHECCHGIG
601: PHTITLPGGQ TSTVRKELQE VHSAMEEAKA DIVGLWALKF LITKGLLSKS MVESMYVSFL AGCFRSIRFG LTEAHGKGQA LQFNYLYEKG AFVFHEDSTF
701: SVDFAKIEGA VESLSHEILT IQGKGDKNAA TLLLNKYCTI TGPLKTALEN LERVKVPVDI SPTFPLAEAL MN

Arabidopsis Description

NUDT3NUDT3 [Source:UniProtKB/TrEMBL;Acc:A0A178WDC8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.