CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX83788
CDX96681
CDY26701
CDY41014

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G79690.1	CDX83788	AT1G19050.1	18642946
AT1G79690.1	CDX96681	AT1G19050.1	18642946
AT1G79690.1	CDY26701	AT1G19050.1	18642946
AT1G79690.1	CDY41014	AT1G19050.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67981	Canola	cytosol	97.55	97.55
AT1G79690.1	Thale cress	cytosol	90.46	90.93
CDX88559	Canola	cytosol	88.53	88.53
CDX87361	Canola	cytosol	88.4	78.85
VIT_09s0018g01600.t01	Wine grape	cytosol	72.29	71.74
Solyc08g075390.2.1	Tomato	extracellular	71.52	70.88
KRG89751	Soybean	extracellular	23.2	69.77
KRH18626	Soybean	cytosol, nucleus	57.09	69.33
Os02t0793300-01	Rice	cytosol	68.3	68.3
KRH18624	Soybean	nucleus	10.31	67.8
TraesCS6B01G387000.1	Wheat	cytosol	67.14	67.14
TraesCS6A01G354100.2	Wheat	golgi, unclear	67.01	67.01
TraesCS6D01G336400.3	Wheat	cytosol	67.01	67.01
Zm00001d052050_P001	Maize	cytosol	65.85	64.68
GSMUA_Achr10P...	Banana	cytosol	68.3	63.25
OQU85861	Sorghum	mitochondrion	67.91	62.22
TraesCS5A01G366500.1	Wheat	cytosol	5.67	61.11
HORVU6Hr1G084590.1	Barley	plastid	66.37	58.13
Zm00001d018361_P001	Maize	plastid	4.9	37.25
TraesCS1D01G416700.1	Wheat	plastid	5.28	15.02

Protein Annotations

EnsemblPlants:CDX79337	EnsemblPlantsGene:GSBRNA2T00132018001	Gene3D:3.90.79.10	GO:A0A078CRI1	GO:GO:0003674	GO:GO:0003824
GO:GO:0016787	InterPro:IPR000086	InterPro:NUDIX_hydrolase-like_dom_sf	InterPro:NUDIX_hydrolase_dom	ncoils:Coil	PANTHER:PTHR23422
PANTHER:PTHR23422:SF9	PFAM:PF00293	PFAM:PF03571	PFscan:PS51462	ProteinID:CDX79337	ProteinID:CDX79337.1
SUPFAM:SSF55811	UniParc:UPI0004EE7E35	MapMan:35.1	:	:	:

Description

BnaC06g19660D

Coordinates

chrLK031817:+:1452362..1456904

Molecular Weight (calculated)

87532.7 Da

IEP (calculated)

4.866

GRAVY (calculated)

-0.291

Length

776 amino acids

Sequence
(BLAST)

001: MAEEHFDVLT KSGEKTGVSK PRHVSEIHRD GDYHRAVHVW IFVESTQELL LQLRSDDKDS WPGQWDISSA GHISAGDPSL LSAQRELEEE LGIKLPTDAF
101: EKIFVFLQEC VTNNGKFINN EFNDVYLVTV LHPIPLDAFT LQKEEVSAVK YIPYEEYRNL LAKEDPAYVP YDVNGDYGKL FEIIRQRCQV NVEARSLSLQ
201: KQLQRYSPVT LEANLAELSE ADQKALGLIV KAAKVIDDIF YEQVWYSNPA LRDWLKEHAN ASELDKLKWD YFLINKSPWS SLDENEPFLT TADSAVKLLP
301: EATKLIAGWK GIEYRAAFPL TKPPGANFYP PDMDKVEFNL WLSSLTEEQK HAATGFFSII KRRSEANLDA SQSNHLANIT KKLTDSNSDL YSAPYSEIYR
401: PFLTKASELL HKAGDLATSQ SLKKLLHSKA EAFLSNDYYD SDIAWMDLDS KLDITIGPYE TYEDEIFGYK ASFEAFIGIR DDKATADLKL FGDNLKLLED
501: NLPLDSVYKS KDVSAAPIRV IQLIYNSGDV KGPQTVAYNL PNDEKIVEDR GTSMVMLKNV QEAKFEHILK PIAEVIISKE QRGFVDFDSF FTHTICHECC
601: HGIGPHTITL PDGQTSTVRK ELQELHSAME EAKADIVGLW ALKFLITKGL LPKSMVESMY VSFLAGCFRS IRFGLTEAHG KGQALQFNWL YEKGAFVFHE
701: DSTFSVDFTK VEDAVESLSH EILTIQGRGD KKAATLLLNN YCTITGPLKT SLEKLESVKV PVDISPTFPL ADALMN

Best Arabidopsis Sequence Match ( AT1G79690.1 )
(BLAST)

001: MAEEHFDVLT KSGEKTGVSK PRGEVHRDGD YHRAVHVWIF VETTQQLLLQ LRSDDKDSWP GQWDISSAGH ISAGDTSLLS AQRELEEELG VKLPKDAFEK
101: IFVFLQECVT NDGKFINNEF NDVYLVTILH PIPLEAFTLQ KEEVSAVKYV PYEEYRNFLS KEDPAYVPYD VNGEYGKLFD IIRQRCQVNT EARSLSLQKQ
201: LQRYSPVTLE AKLTELSEAD QKALGLIVKA AKIMDDIFYE QVWNSNPALR DWLKDHANAS KLDKLKWDYF TINKSPWSSL DENEAFLSTA DSAVKLLPGA
301: TKAIAGWKGL EYRAAFPVTK PPGANFYPPD MDKMEFTLWL NGLTEEQKHA ATGFFSVIKR RSEANLDASD HLASSTKKLP DSNSDLYSIP YSEIYRPFLK
401: KASEFLQKAG DLVSSPSLKK LLHSKAEAFL SNEYYESDIA WMDLDSKLDI TIGPYETYED EIFGYKATFE TFIGIRDDKA TADLKLFGDN LKLLEDNLPL
501: ESVYKSTDVS AAPIRVIQLI YNSGDVKGPQ TVAYNLPNDE KIVKDRGTSM VMLKNVQEAK FEHILKPIAE ITISKEQRGL VDFDSFFTHT ICHECCHGIG
601: PHTITLPGGQ TSTVRKELQE VHSAMEEAKA DIVGLWALKF LITKGLLSKS MVESMYVSFL AGCFRSIRFG LTEAHGKGQA LQFNYLYEKG AFVFHEDSTF
701: SVDFAKIEGA VESLSHEILT IQGKGDKNAA TLLLNKYCTI TGPLKTALEN LERVKVPVDI SPTFPLAEAL MN

Arabidopsis Description

NUDT3NUDT3 [Source:UniProtKB/TrEMBL;Acc:A0A178WDC8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.