Factsheet for Solyc08g075390.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 22892874
extracellular: 26583031
extracellular: 29876421

msms PMID: 22892874 doi

EH Konozy, H Rogniaux, M Causse, M Faurobert

Unité de Génétique et Amélioration des Fruits et Légumes, INRA, BP 94, 84143 Montfavet, France. ehkonozy@yahoo.com

msms PMID: 26583031 doi

F Gawehns, L Ma, O Bruning, PM Houterman, S Boeren, BJ Cornelissen, M Rep, FL Takken

Laboratory of Biochemistry, Wageningen University Wageningen, Netherlands., Molecular Plant Pathology, Faculty of Science, Swammerdam Institute for Life Sciences, University of Amsterdam Amsterdam, Netherlands., RNA Biology and Applied Bioinformatics Research Group and MAD: Dutch Genomics Service and Support Provider, Faculty of Science, Swammerdam Institute for Life Sciences, University of Amsterdam Amsterdam, Netherlands.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g113720.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G79690.1	Solyc03g113720.2.1	AT1G19050.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0018g01600.t01	Wine grape	cytosol	77.52	77.62
KRH18626	Soybean	cytosol, nucleus	62.07	76.06
KRG89751	Soybean	extracellular	24.14	73.26
CDX67981	Canola	cytosol	71.52	72.16
Bra003597.1-P	Field mustard	cytosol	69.86	72.16
CDX79337	Canola	cytosol	70.88	71.52
AT1G79690.1	Thale cress	cytosol	70.5	71.5
Os02t0793300-01	Rice	cytosol	69.99	70.62
TraesCS6B01G387000.1	Wheat	cytosol	69.73	70.36
TraesCS6D01G336400.3	Wheat	cytosol	69.6	70.23
TraesCS6A01G354100.2	Wheat	golgi, unclear	69.48	70.1
KRH18624	Soybean	nucleus	10.47	69.49
Bra035136.1-P	Field mustard	cytosol	67.82	68.6
CDX88559	Canola	cytosol	67.94	68.56
GSMUA_Achr10P...	Banana	cytosol	71.39	66.71
TraesCS5A01G366500.1	Wheat	cytosol	6.13	66.67
Zm00001d052050_P001	Maize	cytosol	66.67	66.08
OQU85861	Sorghum	mitochondrion	68.84	63.64
CDX87361	Canola	cytosol	68.07	61.26
HORVU6Hr1G084590.1	Barley	plastid	68.58	60.61
Zm00001d018361_P001	Maize	plastid	4.98	38.24
TraesCS1D01G416700.1	Wheat	plastid	6.39	18.32

Protein Annotations

Gene3D:3.90.79.10	MapMan:35.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152
GO:GO:0008239	GO:GO:0016787	GO:GO:0019538	InterPro:IPR000086	UniProt:K4CMQ6	InterPro:NUDIX_hydrolase-like_dom_sf
InterPro:NUDIX_hydrolase_dom	PFAM:PF00293	PFAM:PF03571	PFscan:PS51462	PANTHER:PTHR23422	PANTHER:PTHR23422:SF9
SUPFAM:SSF55811	EnsemblPlantsGene:Solyc08g075390.2	EnsemblPlants:Solyc08g075390.2.1	UniParc:UPI000276B6E1	SEG:seg	:

Description

No Description!

Coordinates

chr8:-:59521214..59542030

Molecular Weight (calculated)

88547.0 Da

IEP (calculated)

4.780

GRAVY (calculated)

-0.327

Length

783 amino acids

Sequence
(BLAST)

001: MAAEFDQTTV KEEEHFDVLT KTGEKTGYSK PRGDVHRDGD YHRAVHVWIF AESTQELLLQ RRADCKDSWA GQWDISSAGH ISAGDSSLIS AMRELQEELG
101: VTLPKDAFEL IFVFLQECTI NDGKFINNEY NDVYLVTTID PIPLEAFTLQ ESEVSAVKYL SLEEYRRVLA QEHPEYVPYD VNGEYGQLFT IIEKRYKENA
201: EARSLSLQKQ LNRYASTSLS AELTGLTAAD KEALNLLVKA ATIMDKIFYV QVWYSNPSLR DWLKENADKS QLDKLKWMYY VINKSPWSCL DENEAFLTTA
301: DSAVKLLPNA TKPVPGWKGF EYRTAFPAVK PPGANFYPPD MDKMEFNLWK DSLQQDKQEE AMGFFNVIRR HSESLSEDSV SQKMGNVTSS PQDLYVVPYS
401: QEYNSLLAEA ATLLRKAGDK TSSSSLKRLL HSKADAFLSN DYYDSDIAWM ELDSKLDVTI GPYETYEDAL FGYKATFEAF IGVRDDEATA QLKLFGDQLQ
501: VLEKNLPLDD IYKSENVTAA PIRVIQLLYN AGDVKGPQTV AFNLPNDERI VKDRGTSMVM LKNVSEAKFK LILKPIADVC IMEEQRELVD FDSFFTHTIC
601: HECCHGIGPH TITLPNGQKS TVRLELQELH SSLEEAKADI VGLWALRFLM DKDLLPKNLA KSMYVSFLAG CFRSVRFGLE EAHGKGQALQ FNYLFEKGAF
701: ILHPDKTFGV DFGKVEDSVA SLSREILTIQ ARGDKEAAKT LLQKYGVMTS PLKHALEKLE TVQVPVDIVP DFSIANQILR DIN

Best Arabidopsis Sequence Match ( AT1G79690.1 )
(BLAST)

001: MAEEHFDVLT KSGEKTGVSK PRGEVHRDGD YHRAVHVWIF VETTQQLLLQ LRSDDKDSWP GQWDISSAGH ISAGDTSLLS AQRELEEELG VKLPKDAFEK
101: IFVFLQECVT NDGKFINNEF NDVYLVTILH PIPLEAFTLQ KEEVSAVKYV PYEEYRNFLS KEDPAYVPYD VNGEYGKLFD IIRQRCQVNT EARSLSLQKQ
201: LQRYSPVTLE AKLTELSEAD QKALGLIVKA AKIMDDIFYE QVWNSNPALR DWLKDHANAS KLDKLKWDYF TINKSPWSSL DENEAFLSTA DSAVKLLPGA
301: TKAIAGWKGL EYRAAFPVTK PPGANFYPPD MDKMEFTLWL NGLTEEQKHA ATGFFSVIKR RSEANLDASD HLASSTKKLP DSNSDLYSIP YSEIYRPFLK
401: KASEFLQKAG DLVSSPSLKK LLHSKAEAFL SNEYYESDIA WMDLDSKLDI TIGPYETYED EIFGYKATFE TFIGIRDDKA TADLKLFGDN LKLLEDNLPL
501: ESVYKSTDVS AAPIRVIQLI YNSGDVKGPQ TVAYNLPNDE KIVKDRGTSM VMLKNVQEAK FEHILKPIAE ITISKEQRGL VDFDSFFTHT ICHECCHGIG
601: PHTITLPGGQ TSTVRKELQE VHSAMEEAKA DIVGLWALKF LITKGLLSKS MVESMYVSFL AGCFRSIRFG LTEAHGKGQA LQFNYLYEKG AFVFHEDSTF
701: SVDFAKIEGA VESLSHEILT IQGKGDKNAA TLLLNKYCTI TGPLKTALEN LERVKVPVDI SPTFPLAEAL MN

Arabidopsis Description

NUDT3NUDT3 [Source:UniProtKB/TrEMBL;Acc:A0A178WDC8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.