CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67704
CDX71754
CDX72006
CDX74768
CDX75900
CDX82382
CDX85268
CDX86370
CDX92112
CDX95888
CDY00096
CDY06083
CDY06318
CDY18898
CDY19286
CDY19992
CDY27356
CDY37068
CDY37282
CDY48933
CDY57608

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G10470.1	CDX75900	AT2G18790.1	11691995
AT1G10470.1	CDX82382	AT2G18790.1	11691995
AT1G10470.1	CDX92112	AT2G18790.1	11691995
AT1G10470.1	CDX95888	AT2G18790.1	11691995
AT1G10470.1	CDX74768	AT2G45820.1	9771897
AT1G10470.1	CDY06318	AT2G45820.1	9771897
AT1G10470.1	CDY18898	AT2G45820.1	9771897
AT1G10470.1	CDY27356	AT2G45820.1	9771897
AT1G10470.1	CDY37068	AT2G45820.1	9771897
AT1G10470.1	CDY19286	AT3G21510.1	10930573
AT1G10470.1	CDY37282	AT3G21510.1	10930573
AT1G10470.1	CDY19286	AT3G21510.1	16965536
AT1G10470.1	CDY37282	AT3G21510.1	16965536
AT1G10470.1	CDX85268	AT3G29350.1	16965536
AT1G10470.1	CDX86370	AT3G29350.1	16965536
AT1G10470.1	CDY00096	AT3G29350.1	16965536
AT1G10470.1	CDY19992	AT3G29350.1	16965536
AT1G10470.1	CDX67704	AT3G57670.1	18642946
AT1G10470.1	CDX72006	AT3G57670.1	18642946
AT1G10470.1	CDY06083	AT3G57670.1	18642946
AT1G10470.1	CDY57608	AT3G57670.1	18642946
AT1G10470.1	CDX71754	AT3G61260.1	9771897
AT1G10470.1	CDY48933	AT3G61260.1	9771897

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra031714.1-P	Field mustard	nucleus	96.23	97.7
Bra036963.1-P	Field mustard	nucleus	96.23	97.7
CDY34890	Canola	nucleus	95.09	96.92
CDY20630	Canola	nucleus	83.02	89.07
AT1G10470.1	Thale cress	nucleus	86.79	88.8
CDY37975	Canola	nucleus	84.53	88.54
CDY66046	Canola	nucleus	83.77	87.75
CDX93424	Canola	nucleus	83.4	87.35
CDY20948	Canola	nucleus	83.02	86.96
CDY45155	Canola	nucleus	65.66	76.32
CDY30913	Canola	nucleus	66.79	74.37
PGSC0003DMT400058306	Potato	nucleus	56.98	60.89
Solyc05g006420.2.1	Tomato	nucleus	56.6	59.76
CDY68129	Canola	cytosol, nucleus, plastid	40.0	59.22
VIT_01s0026g00940.t01	Wine grape	nucleus	49.06	58.82
CDY70164	Canola	nucleus	40.38	58.47
CDY54257	Canola	cytosol, nucleus, peroxisome	40.38	58.47
CDY36905	Canola	nucleus	40.38	58.47
CDY21807	Canola	cytosol, nucleus, peroxisome	40.38	58.15
CDY59856	Canola	cytosol, nucleus, peroxisome	40.0	57.92
KRH45761	Soybean	nucleus	48.3	57.4
KRG99225	Soybean	nucleus	47.17	56.31
KRH69443	Soybean	nucleus	50.19	55.42
KRH74701	Soybean	nucleus	50.57	54.92
CDX73122	Canola	cytosol, golgi, nucleus	36.6	54.8
CDY00336	Canola	nucleus	39.25	54.74
CDX84366	Canola	nucleus	39.25	54.74
CDY65526	Canola	cytosol	32.08	53.8
CDX72141	Canola	cytosol	25.66	53.54
CDY45402	Canola	cytosol, golgi, peroxisome	36.98	53.26
CDY71200	Canola	cytosol	25.28	52.76
CDY59626	Canola	cytosol	25.28	52.76
CDX96681	Canola	cytosol	41.13	52.66
CDX68161	Canola	cytosol	38.87	52.28
CDX75990	Canola	cytosol	24.91	51.97
CDY22469	Canola	cytosol	30.94	51.9
CDX83788	Canola	cytosol	41.51	51.89
CDY35445	Canola	cytosol	31.32	51.55
CDY41014	Canola	nucleus	40.75	50.47
CDY26701	Canola	nucleus	40.0	49.77
CDX85860	Canola	endoplasmic reticulum, golgi, vacuole	38.11	46.33
CDY27219	Canola	cytosol, nucleus, plastid	29.43	46.15
CDX79942	Canola	nucleus	36.6	45.12
CDY23856	Canola	nucleus	36.23	44.65
CDY35419	Canola	nucleus	35.47	43.52
CDY14761	Canola	cytoskeleton, cytosol, nucleus	36.23	43.24
CDY22518	Canola	nucleus	35.09	42.86
CDY06934	Canola	cytosol	35.85	42.79
CDX76036	Canola	nucleus	33.96	40.0
CDY06142	Canola	cytosol	35.47	39.83
CDX67674	Canola	cytosol	35.09	39.74
CDX72077	Canola	cytosol	35.09	39.57
CDY30966	Canola	cytosol	33.58	38.36

Protein Annotations

MapMan:11.4.2.5	Gene3D:3.40.50.2300	GO:A0A078F341	UniProt:A0A078F341	EnsemblPlants:CDY07801	ProteinID:CDY07801
ProteinID:CDY07801.1	InterPro:CheY-like_superfamily	ncoils:Coil	GO:GO:0000160	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00124941001
InterPro:IPR001789	PFAM:PF00072	PFscan:PS50110	PANTHER:PTHR43874	PANTHER:PTHR43874:SF17	SMART:SM00448
SUPFAM:SSF52172	InterPro:Sig_transdc_resp-reg_receiver	UniParc:UPI0004EE51AD	SEG:seg	:	:

Description

BnaC03g48210DBnaC03g48210D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F341]

Coordinates

chrLK031981:-:59315..60752

Molecular Weight (calculated)

28924.4 Da

IEP (calculated)

4.428

GRAVY (calculated)

-0.317

Length

265 amino acids

Sequence
(BLAST)

001: MARDGGVSCL RSSETMRVGI GGMESPPLDL DEVHVLAVDD SLVDRIVIER LLRITSCKVT AVDSGWRALE FLGLDNEKAS AELDRLKVDL IITDYCMPGM
101: TGYELLKKIK ESSSFRQVPV VIMSSENVLT RIDRCLEEGA EDFLLKPVKL ADVKRLRSYL TRDVKLSNAN KRKLPEDSVP VNTSLPPPPS PFTISPVSSD
201: SSPPLTISPE SSDSSPPLSP LEISSSPLSS PIDDEDDDVL TSSPESSSAP EESPARRQKM RSPLD

Best Arabidopsis Sequence Match ( AT1G59940.2 )
(BLAST)

001: MNFEFIFLYL FRLVRYFLLP PSQKRKKGTY RFVSLIVTWN KKIFCKRNEV ENDPPIKRFD IEEYNNENIK QSREELVAIS LFYLFISYSF LTMAKDGGVS
101: CLRRSEMIGI GIGELESPPL DSDQVHVLAV DDSLVDRIVI ERLLRITSCK VTAVDSGWRA LEFLGLDDDK AAVEFDRLKV DLIITDYCMP GMTGYELLKK
201: IKESTSFKEV PVVIMSSENV MTRIDRCLEE GAEDFLLKPV KLADVKRLRS YLTRDVKVAA EGNKRKLTTP PPPPPLSATS SMESSDSTVE SPLSMVDDED
301: SLTMSPESAT SLVDSPMRSP GLA

Arabidopsis Description

ARR3response regulator 3 [Source:TAIR;Acc:AT1G59940]
SUBAcon: [golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.