Factsheet for PGSC0003DMT400058306

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400000462
PGSC0003DMT400026584
PGSC0003DMT400051833
PGSC0003DMT400055730
PGSC0003DMT400061712
PGSC0003DMT400069974
PGSC0003DMT400077822
PGSC0003DMT400081747

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G10470.1	PGSC0003DMT400061712	AT2G18790.1	11691995
AT1G10470.1	PGSC0003DMT400069974	AT2G18790.1	11691995
AT1G10470.1	PGSC0003DMT400000462	AT2G45820.1	9771897
AT1G10470.1	PGSC0003DMT400026584	AT2G45820.1	9771897
AT1G10470.1	PGSC0003DMT400055730	AT2G45820.1	9771897
AT1G10470.1	PGSC0003DMT400081747	AT3G21510.1	10930573
AT1G10470.1	PGSC0003DMT400081747	AT3G21510.1	16965536
AT1G10470.1	PGSC0003DMT400051833	AT3G29350.1	16965536
AT1G10470.1	PGSC0003DMT400077822	AT3G57670.1	18642946
AT1G10470.1	PGSC0003DMT400000462	AT3G61260.1	9771897
AT1G10470.1	PGSC0003DMT400026584	AT3G61260.1	9771897
AT1G10470.1	PGSC0003DMT400055730	AT3G61260.1	9771897

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g006420.2.1	Tomato	nucleus	97.98	96.81
VIT_01s0026g00940.t01	Wine grape	nucleus	57.66	64.71
Bra027829.1-P	Field mustard	nucleus	56.05	61.5
CDY45155	Canola	nucleus	55.65	60.53
CDY30913	Canola	nucleus	56.45	58.82
Bra018439.1-P	Field mustard	nucleus	58.47	57.77
AT1G10470.1	Thale cress	nucleus	60.08	57.53
CDY20630	Canola	nucleus	57.26	57.49
Bra031714.1-P	Field mustard	nucleus	60.48	57.47
Bra036963.1-P	Field mustard	nucleus	60.48	57.47
KRH45761	Soybean	nucleus	51.61	57.4
CDY20948	Canola	nucleus	58.47	57.31
KRG99225	Soybean	nucleus	51.21	57.21
KRH69443	Soybean	nucleus	55.24	57.08
CDY07801	Canola	nucleus	60.89	56.98
CDY34890	Canola	nucleus	59.68	56.92
CDY37975	Canola	nucleus	58.06	56.92
KRH74701	Soybean	nucleus	55.65	56.56
CDY66046	Canola	nucleus	57.66	56.52
Bra019932.1-P	Field mustard	nucleus	57.66	56.52
CDX93424	Canola	nucleus	57.66	56.52
PGSC0003DMT400042922	Potato	cytosol	33.47	56.08
PGSC0003DMT400063187	Potato	cytosol	43.15	53.5
PGSC0003DMT400070964	Potato	cytosol, nucleus, plastid	33.06	52.56
PGSC0003DMT400007977	Potato	nucleus	33.87	51.53
PGSC0003DMT400007618	Potato	nucleus	38.31	44.39
PGSC0003DMT400076758	Potato	nucleus	39.11	42.92
AT1G59940.2	Thale cress	golgi	55.24	42.41
PGSC0003DMT400076726	Potato	nucleus	37.5	41.15

Protein Annotations

EntrezGene:102602758	MapMan:11.4.2.5	Gene3D:3.40.50.2300	InterPro:CheY-like_superfamily	GO:GO:0000160	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987
InterPro:IPR001789	UniProt:M1C2G4	PFAM:PF00072	EnsemblPlantsGene:PGSC0003DMG402022640	PGSC:PGSC0003DMG402022640	EnsemblPlants:PGSC0003DMT400058306
PFscan:PS50110	PANTHER:PTHR43874	PANTHER:PTHR43874:SF17	SMART:SM00448	SUPFAM:SSF52172	InterPro:Sig_transdc_resp-reg_receiver
UniParc:UPI0002966D0F	RefSeq:XP_015168830.1	SEG:seg	:	:	:

Description

Two-component sensor protein histidine protein kinase [Source:PGSC_GENE;Acc:PGSC0003DMG402022640]

Coordinates

chr5:-:6751583..6754973

Molecular Weight (calculated)

27533.8 Da

IEP (calculated)

5.083

GRAVY (calculated)

-0.458

Length

248 amino acids

Sequence
(BLAST)

001: MARNGMFSRR RRAEKVEEYD ELLPLTEATH EVHVLAVDDS LVDRIVIERL LKITSCKVTT VDSGMRALKY LGLDEEESSV TIDDLKVDLI ITDYCMPGMT
101: GYDLLKKIKG SSFREVPVVI MSSENVLARI DRCLEEGAED FLLKPVKLAD VKRLKSYMFN EDRFRGEEKG MNKRKLPESS SDDSSTPTLS PSPSSLDLSS
201: TPSPPSTSSP SSPKAFSSSL STDSPTHSTD SSMPSSPTRR LKMISQDL

Best Arabidopsis Sequence Match ( AT1G10470.1 )
(BLAST)

001: MARDGGVSCL RRSEMMSVGG IGGIESAPLD LDEVHVLAVD DSLVDRIVIE RLLRITSCKV TAVDSGWRAL EFLGLDNEKA SAEFDRLKVD LIITDYCMPG
101: MTGYELLKKI KESSNFREVP VVIMSSENVL TRIDRCLEEG AQDFLLKPVK LADVKRLRSH LTKDVKLSNG NKRKLPEDSS SVNSSLPPPS PPLTISPESS
201: PPLTVSTESS DSSPPLSPVE IFSTSPLSSP IDDEDDDVLT SSSEESPIRR QKMRSPGLD

Arabidopsis Description

ARR4Two-component response regulator ARR4 [Source:UniProtKB/Swiss-Prot;Acc:O82798]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.