Factsheet for Solyc05g006420.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g059870.2.1
Solyc01g080540.2.1
Solyc01g094370.2.1
Solyc03g059270.2.1
Solyc05g048820.2.1
Solyc05g053410.2.1
Solyc06g084410.2.1
Solyc10g017540.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G10470.1	Solyc01g059870.2.1	AT2G18790.1	11691995
AT1G10470.1	Solyc05g053410.2.1	AT2G18790.1	11691995
AT1G10470.1	Solyc01g094370.2.1	AT2G45820.1	9771897
AT1G10470.1	Solyc05g048820.2.1	AT2G45820.1	9771897
AT1G10470.1	Solyc10g017540.2.1	AT2G45820.1	9771897
AT1G10470.1	Solyc01g080540.2.1	AT3G21510.1	10930573
AT1G10470.1	Solyc01g080540.2.1	AT3G21510.1	16965536
AT1G10470.1	Solyc06g084410.2.1	AT3G29350.1	16965536
AT1G10470.1	Solyc03g059270.2.1	AT3G57670.1	18642946
AT1G10470.1	Solyc01g094370.2.1	AT3G61260.1	9771897
AT1G10470.1	Solyc05g048820.2.1	AT3G61260.1	9771897
AT1G10470.1	Solyc10g017540.2.1	AT3G61260.1	9771897

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400058306	Potato	nucleus	96.81	97.98
VIT_01s0026g00940.t01	Wine grape	nucleus	57.37	65.16
Bra027829.1-P	Field mustard	nucleus	54.98	61.06
CDY45155	Canola	nucleus	54.58	60.09
CDY30913	Canola	nucleus	55.38	58.4
KRH45761	Soybean	nucleus	51.39	57.85
KRG99225	Soybean	nucleus	51.0	57.66
Bra018439.1-P	Field mustard	nucleus	57.37	57.37
AT1G10470.1	Thale cress	nucleus	58.96	57.14
Bra031714.1-P	Field mustard	nucleus	59.36	57.09
Bra036963.1-P	Field mustard	nucleus	59.36	57.09
CDY20630	Canola	nucleus	56.18	57.09
CDY37975	Canola	nucleus	57.37	56.92
CDY20948	Canola	nucleus	57.37	56.92
CDY07801	Canola	nucleus	59.76	56.6
CDY34890	Canola	nucleus	58.57	56.54
CDY66046	Canola	nucleus	56.97	56.52
CDX93424	Canola	nucleus	56.97	56.52
Bra019932.1-P	Field mustard	nucleus	56.97	56.52
KRH69443	Soybean	nucleus	53.78	56.25
Solyc06g048930.2.1	Tomato	cytosol, nucleus, plastid	33.07	56.08
KRH74701	Soybean	nucleus	54.18	55.74
Solyc03g113720.2.1	Tomato	nucleus	42.23	54.36
Solyc06g048600.2.1	Tomato	cytosol, nucleus, plastid	32.67	52.56
Solyc02g071220.2.1	Tomato	nucleus	33.47	50.6
AT1G59940.2	Thale cress	golgi	54.18	42.11
Solyc10g079600.1.1	Tomato	nucleus	37.85	41.85
Solyc10g079700.1.1	Tomato	nucleus	39.04	41.0

Protein Annotations

MapMan:11.4.2.5	Gene3D:3.40.50.2300	InterPro:CheY-like_superfamily	GO:GO:0000160	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	InterPro:IPR001789
UniProt:K4BWG9	PFAM:PF00072	PFscan:PS50110	PANTHER:PTHR43874	PANTHER:PTHR43874:SF17	SMART:SM00448
SUPFAM:SSF52172	InterPro:Sig_transdc_resp-reg_receiver	EnsemblPlantsGene:Solyc05g006420.2	EnsemblPlants:Solyc05g006420.2.1	UniParc:UPI00027673CE	SEG:seg

Description

No Description!

Coordinates

chr5:+:1055803..1059192

Molecular Weight (calculated)

27737.9 Da

IEP (calculated)

5.244

GRAVY (calculated)

-0.493

Length

251 amino acids

Sequence
(BLAST)

001: MARNGMFSRR RRAEKVEEYD ELLPLTEATH EVHVLAVDDS LVDRIVIERL LKNTSCKVTT VDSGMRALKY LGLDEEESSV SIDGLKVDLI ITDYCMPGMT
101: GYDLLKKIKG SSFREVPVVI MSSENVLARI DRCLEEGAED FLLKPVKLAD VKRLKSYMFN EDRFRGEEKG MNKRKLPESS SDDSSTPTLS PSPSSLDLSS
201: TPSPPSTSSP SSPKAFSSSL STDSPTHSTD SSMPCSPTSP TRRLKMSSQD L

Best Arabidopsis Sequence Match ( AT1G10470.1 )
(BLAST)

001: MARDGGVSCL RRSEMMSVGG IGGIESAPLD LDEVHVLAVD DSLVDRIVIE RLLRITSCKV TAVDSGWRAL EFLGLDNEKA SAEFDRLKVD LIITDYCMPG
101: MTGYELLKKI KESSNFREVP VVIMSSENVL TRIDRCLEEG AQDFLLKPVK LADVKRLRSH LTKDVKLSNG NKRKLPEDSS SVNSSLPPPS PPLTISPESS
201: PPLTVSTESS DSSPPLSPVE IFSTSPLSSP IDDEDDDVLT SSSEESPIRR QKMRSPGLD

Arabidopsis Description

ARR4Two-component response regulator ARR4 [Source:UniProtKB/Swiss-Prot;Acc:O82798]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.