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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, nucleus

Predictor Summary:
  • nucleus 4
  • plastid 4
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus, plastid
Any Predictor:cytosol, nucleus, plastid
BaCelLo:nucleus
ChloroP:plastid
EpiLoc:plastid
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:plastid
TargetP:plastid
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc01g059870.2.1
Solyc01g102300.2.1 nucleus
Solyc02g070530.2.1
Solyc02g071260.2.1
Solyc02g088610.2.1
Solyc03g058900.1.1
Solyc03g112150.1.1
Solyc04g008590.2.1
Solyc04g054830.2.1
Solyc05g006420.2.1
Solyc05g032820.1.1
Solyc05g050970.2.1
Solyc05g053410.2.1
Solyc06g071790.2.1
Solyc07g045480.2.1
Solyc07g056140.2.1 cytosol, nucleus
Solyc08g016500.2.1
Solyc08g016750.2.1
Solyc08g062930.1.1 cytosol
Solyc09g090100.2.1
Solyc09g092380.2.1
Solyc09g092390.2.1
Solyc10g018300.1.1
Solyc11g069380.1.1
Solyc12g005950.1.1
Solyc12g011120.1.1 cytosol, nucleus
Solyc12g098500.1.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G18790.1 Solyc09g090100.2.1 AT1G04400.1 11089975
AT2G18790.1 Solyc05g006420.2.1 AT1G10470.1 11691995
AT2G18790.1 Solyc01g059870.2.1 AT2G18790.1 15273290
AT2G18790.1 Solyc05g053410.2.1 AT2G18790.1 15273290
AT2G18790.1 Solyc01g059870.2.1 AT2G18790.1 19286967
AT2G18790.1 Solyc05g053410.2.1 AT2G18790.1 19286967
AT2G18790.1 Solyc08g062930.1.1 AT2G26190.1 23964902
AT2G18790.1 Solyc08g062930.1.1 AT2G26190.1 23964902
AT2G18790.1 Solyc12g005950.1.1 AT2G32950.1 11752373
AT2G18790.1 Solyc04g008590.2.1 AT2G34590.1 23964902
AT2G18790.1 Solyc08g016750.2.1 AT2G34590.1 23964902
AT2G18790.1 Solyc05g050970.2.1 AT2G45290.1 23964902
AT2G18790.1 Solyc10g018300.1.1 AT2G45290.1 23964902
AT2G18790.1 Solyc01g102300.2.1 AT2G46970.1 23964902
AT2G18790.1 Solyc01g102300.2.1 AT2G46970.1 23964902
AT2G18790.1 Solyc05g032820.1.1 AT4G13940.1 23964902
AT2G18790.1 Solyc09g092380.2.1 AT4G13940.1 23964902
AT2G18790.1 Solyc09g092390.2.1 AT4G13940.1 23964902
AT2G18790.1 Solyc12g098500.1.1 AT4G13940.1 23964902
AT2G18790.1 Solyc01g059870.2.1 AT4G16250.1 15273290
AT2G18790.1 Solyc05g053410.2.1 AT4G16250.1 15273290
AT2G18790.1 Solyc01g059870.2.1 AT4G16250.1 19286967
AT2G18790.1 Solyc05g053410.2.1 AT4G16250.1 19286967
AT2G18790.1 Solyc02g071260.2.1 AT4G18130.1 15273290
AT2G18790.1 Solyc02g071260.2.1 AT4G18130.1 19286967
AT2G18790.1 Solyc03g112150.1.1 AT4G20360.1 23964902
AT2G18790.1 Solyc06g071790.2.1 AT4G20360.1 23964902
AT2G18790.1 Solyc02g088610.2.1 AT5G15450.1 23964902
AT2G18790.1 Solyc07g045480.2.1 AT5G35840.1 15273290
AT2G18790.1 Solyc07g045480.2.1 AT5G35840.1 19286967
AT2G18790.1 Solyc02g070530.2.1 AT5G46240.1 23964902
AT2G18790.1 Solyc03g058900.1.1 AT5G46240.1 23964902
AT2G18790.1 Solyc08g016500.2.1 AT5G46240.1 23964902
AT2G18790.1 Solyc07g056140.2.1 AT5G48300.1 23964902
AT2G18790.1 Solyc12g011120.1.1 AT5G48300.1 23964902
AT2G18790.1 Solyc07g056140.2.1 AT5G48300.1 23964902
AT2G18790.1 Solyc12g011120.1.1 AT5G48300.1 23964902
AT2G18790.1 Solyc07g056140.2.1 AT5G48300.1 23964902
AT2G18790.1 Solyc12g011120.1.1 AT5G48300.1 23964902
AT2G18790.1 Solyc11g069380.1.1 AT5G60600.1 23964902
AT2G18790.1 Solyc04g054830.2.1 AT5G65090.1 23964902
AT4G16250.1 Solyc01g059870.2.1 AT2G18790.1 15273290
AT4G16250.1 Solyc05g053410.2.1 AT2G18790.1 15273290
AT4G16250.1 Solyc01g059870.2.1 AT2G18790.1 19286967
AT4G16250.1 Solyc05g053410.2.1 AT2G18790.1 19286967
AT4G16250.1 Solyc01g059870.2.1 AT4G16250.1 15273290
AT4G16250.1 Solyc05g053410.2.1 AT4G16250.1 15273290
AT4G16250.1 Solyc01g059870.2.1 AT4G16250.1 19286967
AT4G16250.1 Solyc05g053410.2.1 AT4G16250.1 19286967
AT4G16250.1 Solyc02g071260.2.1 AT4G18130.1 15273290
AT4G16250.1 Solyc02g071260.2.1 AT4G18130.1 19286967
AT4G16250.1 Solyc07g045480.2.1 AT5G35840.1 19286967
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400069974 Potato mitochondrion 94.02 93.69
Solyc01g059870.2.1 Tomato cytosol 80.11 79.4
VIT_05s0077g00940.t01 Wine grape cytosol 78.32 77.77
KRH36969 Soybean nucleus 74.93 73.88
KRH11936 Soybean nucleus 74.84 73.02
Os03t0309200-01 Rice nucleus, plasma membrane 70.21 70.27
AT2G18790.1 Thale cress nucleus 71.1 68.0
GSMUA_Achr3P08340_001 Banana nucleus 65.92 67.86
TraesCS4D01G183400.1 Wheat plastid 70.38 67.78
TraesCS4B01G182400.1 Wheat plastid 70.47 67.75
Zm00001d028905_P001 Maize extracellular 70.12 67.7
TraesCS4A01G122500.2 Wheat plastid 70.38 67.67
HORVU4Hr1G053400.1 Barley plasma membrane 70.47 67.64
Bra022192.1-P Field mustard cytosol 71.36 67.11
EER94971 Sorghum plastid 70.12 66.72
Zm00001d047632_P001 Maize plastid 69.13 66.47
AT4G16250.1 Thale cress plastid 68.51 65.98
Bra001650.1-P Field mustard cytosol 8.03 58.82
Zm00001d025231_P001 Maize cytosol 8.3 58.12
Zm00001d000219_P001 Maize cytosol 5.62 56.76
Solyc02g071260.2.1 Tomato cytosol, plastid 56.65 55.85
Solyc07g045480.2.1 Tomato plastid 52.45 52.59
Solyc10g044670.1.1 Tomato extracellular 50.76 50.67
CDY42549 Canola cytosol 8.56 42.48
Zm00001d024238_P001 Maize cytosol 13.56 34.55
Protein Annotations
Gene3D:1.10.287.130MapMan:26.1.1.1MapMan:26.4.1.2Gene3D:3.30.450.20Gene3D:3.30.450.270Gene3D:3.30.450.40
Gene3D:3.30.565.10ProteinID:AAD50631.1InterPro:GAFInterPro:GAF-like_dom_sfGO:GO:0000155GO:GO:0000160
GO:GO:0003674GO:GO:0003824GO:GO:0004871GO:GO:0005488GO:GO:0005515GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0006139GO:GO:0006351GO:GO:0006355GO:GO:0006464
GO:GO:0007154GO:GO:0007165GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009584
GO:GO:0009585GO:GO:0009605GO:GO:0009628GO:GO:0009881GO:GO:0009987GO:GO:0016301
GO:GO:0016740GO:GO:0017006GO:GO:0018298GO:GO:0019538GO:GO:0023014GO:GO:0038023
GO:GO:0042803GO:GO:0050896InterPro:HATPase_CInterPro:HATPase_C_sfInterPro:HisK_dim/PInterPro:HisK_dim/P_sf
InterPro:His_kinase_domInterPro:IPR000014InterPro:IPR005467InterPro:IPR016132InterPro:IPR029016InterPro:IPR036890
InterPro:PASInterPro:PAS-like_dom_sfInterPro:PAS_2InterPro:PAS_foldPFAM:PF00360PFAM:PF00512
PFAM:PF00989PFAM:PF01590PFAM:PF02518PFAM:PF08446PIRSF:PIRSF000084PRINTS:PR01033
ScanProsite:PS00245PFscan:PS50046PFscan:PS50109PFscan:PS50112PANTHER:PTHR43719PANTHER:PTHR43719:SF12
InterPro:Phyto_chromo_BSInterPro:Phyto_chromo_attachmentInterPro:PhytochromeInterPro:Phytochrome_A-EInterPro:Phytochrome_cen-regUniProt:Q9SWS6
SMART:SM00065SMART:SM00091SMART:SM00387SMART:SM00388SUPFAM:SSF47384SUPFAM:SSF55781
SUPFAM:SSF55785SUPFAM:SSF55874EnsemblPlantsGene:Solyc05g053410.2EnsemblPlants:Solyc05g053410.2.1TIGRFAMs:TIGR00229UniParc:UPI000009DA96
SEG:seg:::::
Description
Phytochrome [Source:UniProtKB/TrEMBL;Acc:Q9SWS6]
Coordinates
chr5:-:63501873..63507061
Molecular Weight (calculated)
125316.0 Da
IEP (calculated)
6.104
GRAVY (calculated)
-0.137
Length
1121 amino acids
Sequence
(BLAST)
0001: MASGSGSRGK HDRNHQPKNQ SQFSGTSNTN ALSKAVAQYT TDARLHAAFE QSGESGKNFD YSQSVRNSTE SVTEHQITAY LNKMQRGGHI QPFGCTIAVE
0101: EASFCVIAYS ENACEMLDIM PQSVPSLEKN EILKIGTDVR TLFSSSSSGL LEGAFGAREI TLLNPIWVHS KNSGKPFYAI LHRIDVGIVI DLEPARTEDP
0201: ALSIAGAVQS QKLAVRAISL LQSLPGGDID LLCDTVVKSV RELTGYDRVM VYKFHDDEHG EVVAESRRSD LEPYIGLHYP ATDIPQASRF LFKQNRVRMI
0301: VDCTAIPVRV IQDESLMQPL CLVGSTLRAP HGCHPQYMVN MGNVASLTLA VVINGNDDEV VGGRNAMRLW GLVVGHHSSA RFIPFPLRYA CEFLMQAFGL
0401: QLNMELQLAS QLAEKRVLRT QTVLCDMLLR DSPTGIVTQN PSIVDLVKCD GAALYYQGRY YPLGITPTAA QIKGIVEWLL TCHVDSTGLS TDSLADAGYP
0501: EAASLGAAVC GMAVAYVTSK YFLFWFRSHT ASEIKWGGAK HHPEDKDDWQ KMHPRSSFKA FLEVVKNRSL PWENAEMDAI HSLQLILRDS FKDASNSKSI
0601: VRVQLREEGL QGMDELRSVA REMVRLVETA TAPIFAVDVE GRINAWNAKV AELTELSVEE AIGKSLVHDL VHEESQTTAQ NLLRKALRGE EDKNIEIKLR
0701: TFGAEQLKKT VFVEVNACSN KDYTNNIVGV SFIGQDITAQ KVVLDKFVRI QGDYKAIMHS PNPLIPPIFV SDENTCCFEW NTAMEKLSGW NKEEIIGKML
0801: VGEIFGTFCR LKGPDDMTNF MIMLHKAIGG QEIDKFPFSF SDRNGKFVQA LLTANKRVNV DGQIIGAFCF LQIASPELQK TLMQRQQEKT SNIHMKELAY
0901: ICRELKNPLN GIRFTNSLLE ATELTENQKQ FLETSAACER QMSKIIRDID LDNIEDGSLE LEKGEFFLAS VIDAVVSQVM LLLRERGVQL IRDIPDEIKT
1001: LRVYGDQVRI QQVFADFLQI MASYAPPREG WVEVHLRPSI KQISDGVTIV HIEFRIVCPG EGLPPELIQD MFHNSLWVTQ QGLGLSMCRR ILQLMNGQVQ
1101: YIRESERCFF LIILQLPMLI Q
Best Arabidopsis Sequence Match ( AT2G18790.1 )
(BLAST)
0001: MVSGVGGSGG GRGGGRGGEE EPSSSHTPNN RRGGEQAQSS GTKSLRPRSN TESMSKAIQQ YTVDARLHAV FEQSGESGKS FDYSQSLKTT TYGSSVPEQQ
0101: ITAYLSRIQR GGYIQPFGCM IAVDESSFRI IGYSENAREM LGIMPQSVPT LEKPEILAMG TDVRSLFTSS SSILLERAFV AREITLLNPV WIHSKNTGKP
0201: FYAILHRIDV GVVIDLEPAR TEDPALSIAG AVQSQKLAVR AISQLQALPG GDIKLLCDTV VESVRDLTGY DRVMVYKFHE DEHGEVVAES KRDDLEPYIG
0301: LHYPATDIPQ ASRFLFKQNR VRMIVDCNAT PVLVVQDDRL TQSMCLVGST LRAPHGCHSQ YMANMGSIAS LAMAVIINGN EDDGSNVASG RSSMRLWGLV
0401: VCHHTSSRCI PFPLRYACEF LMQAFGLQLN MELQLALQMS EKRVLRTQTL LCDMLLRDSP AGIVTQSPSI MDLVKCDGAA FLYHGKYYPL GVAPSEVQIK
0501: DVVEWLLANH ADSTGLSTDS LGDAGYPGAA ALGDAVCGMA VAYITKRDFL FWFRSHTAKE IKWGGAKHHP EDKDDGQRMH PRSSFQAFLE VVKSRSQPWE
0601: TAEMDAIHSL QLILRDSFKE SEAAMNSKVV DGVVQPCRDM AGEQGIDELG AVAREMVRLI ETATVPIFAV DAGGCINGWN AKIAELTGLS VEEAMGKSLV
0701: SDLIYKENEA TVNKLLSRAL RGDEEKNVEV KLKTFSPELQ GKAVFVVVNA CSSKDYLNNI VGVCFVGQDV TSQKIVMDKF INIQGDYKAI VHSPNPLIPP
0801: IFAADENTCC LEWNMAMEKL TGWSRSEVIG KMIVGEVFGS CCMLKGPDAL TKFMIVLHNA IGGQDTDKFP FPFFDRNGKF VQALLTANKR VSLEGKVIGA
0901: FCFLQIPSPE LQQALAVQRR QDTECFTKAK ELAYICQVIK NPLSGMRFAN SLLEATDLNE DQKQLLETSV SCEKQISRIV GDMDLESIED GSFVLKREEF
1001: FLGSVINAIV SQAMFLLRDR GLQLIRDIPE EIKSIEVFGD QIRIQQLLAE FLLSIIRYAP SQEWVEIHLS QLSKQMADGF AAIRTEFRMA CPGEGLPPEL
1101: VRDMFHSSRW TSPEGLGLSV CRKILKLMNG EVQYIRESER SYFLIILELP VPRKRPLSTA SGSGDMMLMM PY
Arabidopsis Description
PHYBPhytochrome [Source:UniProtKB/TrEMBL;Acc:A0A178W0V4]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.