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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, cytosol

Predictor Summary:
  • plastid 4
  • vacuole 1
  • cytosol 2
  • nucleus 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, plastid
Any Predictor:cytosol, nucleus, plastid, vacuole
BaCelLo:plastid
ChloroP:plastid
EpiLoc:vacuole
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:plastid
TargetP:plastid
WoLF PSORT:cytosol
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc01g059870.2.1
Solyc02g071260.2.1
Solyc05g053410.2.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G18130.1 Solyc01g059870.2.1 AT2G18790.1 15273290
AT4G18130.1 Solyc05g053410.2.1 AT2G18790.1 15273290
AT4G18130.1 Solyc01g059870.2.1 AT2G18790.1 19286967
AT4G18130.1 Solyc05g053410.2.1 AT2G18790.1 19286967
AT4G18130.1 Solyc01g059870.2.1 AT4G16250.1 15273290
AT4G18130.1 Solyc05g053410.2.1 AT4G16250.1 15273290
AT4G18130.1 Solyc01g059870.2.1 AT4G16250.1 19286967
AT4G18130.1 Solyc05g053410.2.1 AT4G16250.1 19286967
AT4G18130.1 Solyc02g071260.2.1 AT4G18130.1 15273290
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400007944 Potato cytosol, plastid 93.67 93.75
VIT_10s0003g02680.t01 Wine grape vacuole 65.0 70.11
KRH37778 Soybean nucleus 67.28 68.3
KRH12820 Soybean cytosol 64.73 67.03
CDX78827 Canola cytosol 58.31 61.39
Bra013286.1-P Field mustard cytosol 59.98 61.22
AT4G18130.1 Thale cress cytosol 59.81 61.15
CDY61670 Canola cytosol 59.98 61.11
Solyc01g059870.2.1 Tomato cytosol 59.54 59.86
Solyc05g053410.2.1 Tomato nucleus, plastid 55.85 56.65
Solyc07g045480.2.1 Tomato plastid 47.93 48.75
Solyc10g044670.1.1 Tomato extracellular 47.85 48.44
Protein Annotations
Gene3D:1.10.287.130MapMan:26.1.1.1MapMan:26.4.1.2Gene3D:3.30.450.20Gene3D:3.30.450.270Gene3D:3.30.450.40
Gene3D:3.30.565.10InterPro:GAFInterPro:GAF-like_dom_sfGO:GO:0000155GO:GO:0000160GO:GO:0003674
GO:GO:0003824GO:GO:0004871GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0006139GO:GO:0006351GO:GO:0006355GO:GO:0006464GO:GO:0007154
GO:GO:0007165GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009584GO:GO:0009585
GO:GO:0009605GO:GO:0009628GO:GO:0009881GO:GO:0009987GO:GO:0016301GO:GO:0016740
GO:GO:0017006GO:GO:0018298GO:GO:0019538GO:GO:0023014GO:GO:0038023GO:GO:0042803
GO:GO:0050896InterPro:HATPase_CInterPro:HATPase_C_sfInterPro:HisK_dim/PInterPro:His_kinase_domInterPro:IPR000014
InterPro:IPR000700InterPro:IPR005467InterPro:IPR016132InterPro:IPR029016InterPro:IPR036890UniProt:K4B8A2
InterPro:PASInterPro:PAS-assoc_CInterPro:PAS-like_dom_sfInterPro:PAS_2InterPro:PAS_foldPFAM:PF00360
PFAM:PF00512PFAM:PF00989PFAM:PF01590PFAM:PF02518PFAM:PF08446PIRSF:PIRSF000084
PRINTS:PR01033ScanProsite:PS00245PFscan:PS50046PFscan:PS50109PFscan:PS50112PFscan:PS50113
PANTHER:PTHR43719PANTHER:PTHR43719:SF17InterPro:Phyto_chromo_BSInterPro:Phyto_chromo_attachmentInterPro:PhytochromeInterPro:Phytochrome_A-E
InterPro:Phytochrome_cen-regSMART:SM00065SMART:SM00091SMART:SM00387SMART:SM00388SUPFAM:SSF55781
SUPFAM:SSF55785SUPFAM:SSF55874EnsemblPlantsGene:Solyc02g071260.2EnsemblPlants:Solyc02g071260.2.1TIGRFAMs:TIGR00229UniParc:UPI0002768C06
SEG:seg:::::
Description
Phytochrome [Source:UniProtKB/TrEMBL;Acc:K4B8A2]
Coordinates
chr2:+:40745598..40751078
Molecular Weight (calculated)
126199.0 Da
IEP (calculated)
5.803
GRAVY (calculated)
-0.211
Length
1137 amino acids
Sequence
(BLAST)
0001: MESQSSENRR GGGGRTSLNQ NKQNNNKDSG LNTSSAASNM KNNASKAALA QYNADAKLMA EFEQSSVSGK SFDYSKSVLF PPHEANEEEI TSYLSRIQRG
0101: GLVQPFGCMV AIEEPTFKII GYSENCYDML GFKPTKMKLG LIGVDARNLF TPSSGDSLAK VMASREISLL NPIWVHSRTT HKPFYAILHR IDVGIVIDLE
0201: PANSSDPALL LAGAVQSQKL AVRSISRLQS LPGGDIGVLC DTAVEDVQKL TGYDRVMVYK FHDDNHGEIV SEIRRSDLEP YLGLHYPATD IPQAARFLFK
0301: QNRVRMICDC NAQPVKVVQS EELKQPICLV NSTLRSPHEC HSKYMANMGS ISSLVMAVLI NSGDSMKLWG LIVCHHTSPR YVPFPLRYAC EFFTQAFGLQ
0401: LNMELQLASQ LAEKKTLQMQ TLLCDMLLRD VPFGVVTQSP SIMDLVKCDG AALYCGGKCW LLGVTPTEAQ VKDIAQWLLV AHKDSTGLST DCLADAGYPG
0501: AALLGDAVCG MATARITSKD FLFWFRSHTA KEVKWGGAKH HPDDKDDGGK MHPRSSFNAF LEVVKSRSLP WEIPEINAIH SLQIIMRESI QENENSSLKT
0601: LTTSQQNDAD GPSMDELSSV AMEMVRLIET ATAPIFGVDP SGLINGWNEK IADLTGLHAS EAVGMSLIND ITHEDSRGTV EKVLHRALLG EEEKNVEIKL
0701: RRFGKDPPGS VIYLVINACT SRDHKNGVVG VSFVAQDVTP EKFIMDKFIQ LRGDYEAIVQ SLSPLIPPIF ASDENACCSE WNAAMERLTG WTKYEVMGRT
0801: LPGEVFGGLC RLTGQDALTK FMILFYQAIS GHDTKKLPFG FFNRRGEFLE VFLTANKRTD EHGNVCGCFC FLQPMTIDPE ASDERQDSKD SLWKYKEYAY
0901: VLQQMKNPLN GIQFTHKLLE ATGVSDNQKQ LLETSEACEK QILSVIDNMD FGGIEDGKVQ LNMEEFVLGN VVDAIVSQVM IFLKEKNLQL LHDIPDQIKT
1001: LPLYGDQIKL QRVLSDFLLS VVHHAPSPDG WVEIKVLPGL KLIQDGNELI HLQLRMTHPG QGLPAALIDD MSGERNRWTT QEGIALNVAQ KLLNVMNGHV
1101: RYVRGEDKCY FLIDVELQTS KPTQHGPKLE VTQEIEI
Best Arabidopsis Sequence Match ( AT4G18130.1 )
(BLAST)
0001: MGFESSSSAA SNMKPQPQKS NTAQYSVDAA LFADFAQSIY TGKSFNYSKS VISPPNHVPD EHITAYLSNI QRGGLVQPFG CLIAVEEPSF RILGLSDNSS
0101: DFLGLLSLPS TSHSGEFDKV KGLIGIDART LFTPSSGASL SKAASFTEIS LLNPVLVHSR TTQKPFYAIL HRIDAGIVMD LEPAKSGDPA LTLAGAVQSQ
0201: KLAVRAISRL QSLPGGDIGA LCDTVVEDVQ RLTGYDRVMV YQFHEDDHGE VVSEIRRSDL EPYLGLHYPA TDIPQAARFL FKQNRVRMIC DCNATPVKVV
0301: QSEELKRPLC LVNSTLRAPH GCHTQYMANM GSVASLALAI VVKGKDSSKL WGLVVGHHCS PRYVPFPLRY ACEFLMQAFG LQLQMELQLA SQLAEKKAMR
0401: TQTLLCDMLL RDTVSAIVTQ SPGIMDLVKC DGAALYYKGK CWLVGVTPNE SQVKDLVNWL VENHGDDSTG LTTDSLVDAG YPGAISLGDA VCGVAAAGFS
0501: SKDYLLWFRS NTASAIKWGG AKHHPKDKDD AGRMHPRSSF TAFLEVAKSR SLPWEISEID AIHSLRLIMR ESFTSSRPVL SGNGVARDAN ELTSFVCEMV
0601: RVIETATAPI FGVDSSGCIN GWNKKTAEMT GLLASEAMGK SLADEIVQEE SRAALESLLC KALQGEEEKS VMLKLRKFGQ NNHPDYSSDV CVLVNSCTSR
0701: DYTENIIGVC FVGQDITSEK AITDRFIRLQ GDYKTIVQSL NPLIPPIFAS DENACCSEWN AAMEKLTGWS KHEVIGKMLP GEVFGVFCKV KCQDSLTKFL
0801: ISLYQGIAGD NVPESSLVEF FNKEGKYIEA SLTANKSTNI EGKVIRCFFF LQIINKESGL SCPELKESAQ SLNELTYVRQ EIKNPLNGIR FAHKLLESSE
0901: ISASQRQFLE TSDACEKQIT TIIESTDLKS IEEGKLQLET EEFRLENILD TIISQVMIIL RERNSQLRVE VAEEIKTLPL NGDRVKLQLI LADLLRNIVN
1001: HAPFPNSWVG ISISPGQELS RDNGRYIHLQ FRMIHPGKGL PSEMLSDMFE TRDGWVTPDG LGLKLSRKLL EQMNGRVSYV REDERCFFQV DLQVKTMLGV
1101: ESRGTEGSSS IK
Arabidopsis Description
PHYEPhytochrome E [Source:UniProtKB/Swiss-Prot;Acc:P42498]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.