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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • plastid 1
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:plastid
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra001650.1-P
Bra013286.1-P
Bra022192.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G18130.1 Bra001650.1-P AT2G18790.1 15273290
AT4G18130.1 Bra022192.1-P AT2G18790.1 15273290
AT4G18130.1 Bra001650.1-P AT2G18790.1 19286967
AT4G18130.1 Bra022192.1-P AT2G18790.1 19286967
AT4G18130.1 Bra013286.1-P AT4G18130.1 15273290
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX78827 Canola cytosol 94.7 97.69
AT4G18130.1 Thale cress cytosol 85.91 86.06
VIT_10s0003g02680.t01 Wine grape vacuole 61.94 65.46
KRH37778 Soybean nucleus 61.76 61.43
Solyc02g071260.2.1 Tomato cytosol, plastid 61.22 59.98
PGSC0003DMT400007944 Potato cytosol, plastid 61.04 59.86
KRH12820 Soybean cytosol 58.62 59.47
Bra022192.1-P Field mustard cytosol 56.01 52.35
Bra031672.1-P Field mustard cytosol, plastid 47.58 47.28
Bra039485.1-P Field mustard cytosol, plastid 44.08 43.96
Bra020013.1-P Field mustard cytosol 47.04 43.31
Bra001650.1-P Field mustard cytosol 5.3 38.56
Protein Annotations
Gene3D:1.10.287.130MapMan:26.1.1.1Gene3D:3.30.450.20Gene3D:3.30.450.270Gene3D:3.30.450.40Gene3D:3.30.565.10
EnsemblPlantsGene:Bra013286EnsemblPlants:Bra013286.1EnsemblPlants:Bra013286.1-PInterPro:GAFInterPro:GAF-like_dom_sfGO:GO:0000155
GO:GO:0000160GO:GO:0003674GO:GO:0003824GO:GO:0004871GO:GO:0005488GO:GO:0005515
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0006139GO:GO:0006351GO:GO:0006355
GO:GO:0006464GO:GO:0007154GO:GO:0007165GO:GO:0008150GO:GO:0008152GO:GO:0009058
GO:GO:0009584GO:GO:0009585GO:GO:0009605GO:GO:0009628GO:GO:0009881GO:GO:0009987
GO:GO:0016301GO:GO:0016740GO:GO:0017006GO:GO:0018298GO:GO:0019538GO:GO:0023014
GO:GO:0038023GO:GO:0042803GO:GO:0050896InterPro:HATPase_CInterPro:HATPase_C_sfInterPro:HisK_dim/P
InterPro:His_kinase_domInterPro:IPR000014InterPro:IPR005467InterPro:IPR016132InterPro:IPR029016InterPro:IPR036890
UniProt:M4D9X6InterPro:PASInterPro:PAS-like_dom_sfInterPro:PAS_2InterPro:PAS_foldPFAM:PF00360
PFAM:PF00512PFAM:PF00989PFAM:PF01590PFAM:PF02518PFAM:PF08446PIRSF:PIRSF000084
PRINTS:PR01033ScanProsite:PS00245PFscan:PS50046PFscan:PS50109PFscan:PS50112PANTHER:PTHR43719
PANTHER:PTHR43719:SF17InterPro:Phyto_chromo_BSInterPro:Phyto_chromo_attachmentInterPro:PhytochromeInterPro:Phytochrome_A-EInterPro:Phytochrome_cen-reg
SMART:SM00065SMART:SM00091SMART:SM00387SMART:SM00388SUPFAM:SSF55781SUPFAM:SSF55785
SUPFAM:SSF55874TIGRFAMs:TIGR00229UniParc:UPI0002545EB5SEG:seg::
Description
AT4G18130 (E=0.0) PHYE | PHYE (PHYTOCHROME DEFECTIVE E); G-protein coupled photoreceptor/ protein histidine kinase/ signal transducer
Coordinates
chrA01:-:4736101..4739623
Molecular Weight (calculated)
122459.0 Da
IEP (calculated)
6.291
GRAVY (calculated)
-0.148
Length
1114 amino acids
Sequence
(BLAST)
0001: MGFESSSSAA SNMEQPQQKS NTAQQYSVDA GLFADFDHSV YSGKSFNYSK SMISPPNNVP DEHITAYLST IQRGGLVQPF GCLIAVQEPS FRILGLSDNC
0101: IDFLGLSLAS TSQPNHFTVK GLIGIDARSL FTPSSAASLV KAASFTEISL MNPVLVHSRT TTTASHKPFY AILHRIDAGI VIDLEPAKSS DPALTLAGAV
0201: QSQKLAVRAI SRLQSLPGGD IGALCDTVVE DVQRLTGYDR VMVYQFHDDD HGEVVSEIRR SDLEPYLGLH YPATDIPQAA RFLFKQNRVR MICDCNATPV
0301: KVVQSEELKR SLCLVNSTLR APHSCHTQYM ANMGSIASLV LAIVTKTKNS SKLWGLVVGH HCSPRYVPFP LRYACEFLMQ AFGLQLQMEL QLASQLAEKK
0401: AMKTQTLLCD MLLRDTVSAI VTQSPGIMDL VKCDGAALYY KGRCWLVGVT PSESQVKELV DWLVENHGDE STGLTTDSLV DAGYPGAVSL GDKVCGVAAA
0501: GISLKDYLIW FRSNTASAIK WGGAKHHPKD KDDAGRMHPR SSFKAFLEVA KSRSLPWEVS EIDAIHSLRV IMRESFTISR PVVLSSGGNN GVVGGRDASE
0601: LTSFVCEMVR VIETATAPIF GVDSNGCVNG WNNKTAEMTG LGAGEAMGKS LVDEIVQEES RGALESVLSK ALQGEEKKNV MLKLRKFGNE DSSSSDVCVL
0701: VNSCTSRDYT EKIVGVCFVG QDMTSEKAIT DRFIRLQGDY KTIVQSLNPL IPPIFASDEN ARCSEWNAAM EKLTGWSKHE VIGRMLPGEV FGDLCKVKCQ
0801: DALTKFLISL YQGIAGGGNV PESSVVGFFS KEGKYIEASL TANKSTNGEG KVIGCFFFLQ IINKESSSSS PEVKESAQSL NELAYIRQEI KNPLNGIRFA
0901: HKLLESSEIS ENQRQFLETS DACEKQIATI IEDTDLKSIE EGKLQMETEE FRLESVLDTI ISQVMIMLRE RKSQLRVEVS QEIKTLPLYG DRVKLQLILA
1001: DLLRNIVNHA PFPDSWVGIK ISPGHKLAHD NNPYIHLQFR MIHPGKGLPS EMLSDMFETR EGWVTPDGLG LKLSRKLLEQ MNGRVSYVRE DERCFFQVDL
1101: QVKTRLGVET GSSI
Best Arabidopsis Sequence Match ( AT4G18130.1 )
(BLAST)
0001: MGFESSSSAA SNMKPQPQKS NTAQYSVDAA LFADFAQSIY TGKSFNYSKS VISPPNHVPD EHITAYLSNI QRGGLVQPFG CLIAVEEPSF RILGLSDNSS
0101: DFLGLLSLPS TSHSGEFDKV KGLIGIDART LFTPSSGASL SKAASFTEIS LLNPVLVHSR TTQKPFYAIL HRIDAGIVMD LEPAKSGDPA LTLAGAVQSQ
0201: KLAVRAISRL QSLPGGDIGA LCDTVVEDVQ RLTGYDRVMV YQFHEDDHGE VVSEIRRSDL EPYLGLHYPA TDIPQAARFL FKQNRVRMIC DCNATPVKVV
0301: QSEELKRPLC LVNSTLRAPH GCHTQYMANM GSVASLALAI VVKGKDSSKL WGLVVGHHCS PRYVPFPLRY ACEFLMQAFG LQLQMELQLA SQLAEKKAMR
0401: TQTLLCDMLL RDTVSAIVTQ SPGIMDLVKC DGAALYYKGK CWLVGVTPNE SQVKDLVNWL VENHGDDSTG LTTDSLVDAG YPGAISLGDA VCGVAAAGFS
0501: SKDYLLWFRS NTASAIKWGG AKHHPKDKDD AGRMHPRSSF TAFLEVAKSR SLPWEISEID AIHSLRLIMR ESFTSSRPVL SGNGVARDAN ELTSFVCEMV
0601: RVIETATAPI FGVDSSGCIN GWNKKTAEMT GLLASEAMGK SLADEIVQEE SRAALESLLC KALQGEEEKS VMLKLRKFGQ NNHPDYSSDV CVLVNSCTSR
0701: DYTENIIGVC FVGQDITSEK AITDRFIRLQ GDYKTIVQSL NPLIPPIFAS DENACCSEWN AAMEKLTGWS KHEVIGKMLP GEVFGVFCKV KCQDSLTKFL
0801: ISLYQGIAGD NVPESSLVEF FNKEGKYIEA SLTANKSTNI EGKVIRCFFF LQIINKESGL SCPELKESAQ SLNELTYVRQ EIKNPLNGIR FAHKLLESSE
0901: ISASQRQFLE TSDACEKQIT TIIESTDLKS IEEGKLQLET EEFRLENILD TIISQVMIIL RERNSQLRVE VAEEIKTLPL NGDRVKLQLI LADLLRNIVN
1001: HAPFPNSWVG ISISPGQELS RDNGRYIHLQ FRMIHPGKGL PSEMLSDMFE TRDGWVTPDG LGLKLSRKLL EQMNGRVSYV REDERCFFQV DLQVKTMLGV
1101: ESRGTEGSSS IK
Arabidopsis Description
PHYEPhytochrome E [Source:UniProtKB/Swiss-Prot;Acc:P42498]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.