Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 1
- mitochondrion 2
- cytosol 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra013286.1-P | Field mustard | cytosol | 97.69 | 94.7 |
| CDY61670 | Canola | cytosol | 97.04 | 93.91 |
| AT4G18130.1 | Thale cress | cytosol | 86.3 | 83.81 |
| VIT_10s0003g02680.t01 | Wine grape | vacuole | 62.41 | 63.95 |
| KRH37778 | Soybean | nucleus | 61.76 | 59.55 |
| PGSC0003DMT400007944 | Potato | cytosol, plastid | 61.39 | 58.36 |
| Solyc02g071260.2.1 | Tomato | cytosol, plastid | 61.39 | 58.31 |
| KRH12820 | Soybean | cytosol | 58.7 | 57.74 |
| CDX92112 | Canola | cytosol | 55.83 | 53.17 |
| CDX75900 | Canola | cytosol | 55.28 | 51.69 |
| CDX95888 | Canola | cytosol | 55.74 | 51.54 |
| CDY06362 | Canola | cytosol, plastid | 47.59 | 45.85 |
| CDY22632 | Canola | cytosol, plastid | 47.13 | 45.33 |
| CDY50896 | Canola | endoplasmic reticulum, plastid, vacuole | 47.04 | 43.76 |
| CDY38546 | Canola | cytosol, plastid | 44.17 | 42.7 |
| CDY06455 | Canola | cytosol, mitochondrion, nucleus, plastid | 43.98 | 42.49 |
| CDX93501 | Canola | cytosol | 47.04 | 42.26 |
| CDX82382 | Canola | cytosol | 6.39 | 37.5 |
| CDY42549 | Canola | cytosol | 5.56 | 26.55 |
Protein Annotations
| Gene3D:1.10.287.130 | MapMan:26.1.1.1 | Gene3D:3.30.450.20 | Gene3D:3.30.450.270 | Gene3D:3.30.450.40 | Gene3D:3.30.565.10 |
| GO:A0A078CQ24 | EnsemblPlants:CDX78827 | ProteinID:CDX78827 | ProteinID:CDX78827.1 | ncoils:Coil | InterPro:GAF |
| InterPro:GAF-like_dom_sf | GO:GO:0000155 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004871 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0006464 | GO:GO:0007154 | GO:GO:0007165 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009584 | GO:GO:0009605 | GO:GO:0009628 |
| GO:GO:0009987 | GO:GO:0016301 | GO:GO:0016740 | GO:GO:0018298 | GO:GO:0019538 | GO:GO:0038023 |
| EnsemblPlantsGene:GSBRNA2T00131299001 | InterPro:HATPase_C | InterPro:HATPase_C_sf | InterPro:HisK_dim/P | InterPro:His_kinase_dom | InterPro:IPR000014 |
| InterPro:IPR005467 | InterPro:IPR016132 | InterPro:IPR029016 | InterPro:IPR036890 | InterPro:PAS | InterPro:PAS-like_dom_sf |
| InterPro:PAS_2 | InterPro:PAS_fold | PFAM:PF00360 | PFAM:PF00512 | PFAM:PF00989 | PFAM:PF01590 |
| PFAM:PF02518 | PFAM:PF08446 | PRINTS:PR01033 | ScanProsite:PS00245 | PFscan:PS50046 | PFscan:PS50109 |
| PFscan:PS50112 | PANTHER:PTHR43719 | PANTHER:PTHR43719:SF17 | InterPro:Phyto_chromo_BS | InterPro:Phyto_chromo_attachment | InterPro:Phytochrome |
| InterPro:Phytochrome_cen-reg | SMART:SM00065 | SMART:SM00091 | SMART:SM00387 | SMART:SM00388 | SUPFAM:SSF55781 |
| SUPFAM:SSF55785 | SUPFAM:SSF55874 | TIGRFAMs:TIGR00229 | UniParc:UPI0004EEC11F | SEG:seg | : |
Description
BnaA01g08940D
Coordinates
chrLK031816:-:295387..298805
Molecular Weight (calculated)
118764.0 Da
IEP (calculated)
6.711
GRAVY (calculated)
-0.157
Length
1080 amino acids
Sequence
(BLAST)
(BLAST)
0001: MGFESSSSAA SNMKQPQQKS NTAQQYSVDA GLFADFDHSV YSGKSFNYSK SMISEPSFRI LGLSDNCIDF LGLSLASTSQ PNHLTVKGLI GIDARSLFTP
0101: SSGVSLAKAA SFTEISLMNP VLVHSRTTTT ASHKPFYAIL HRIDAGIVID LEPAKSSDPA LTLAGAVQSQ KLAVRAISRL QSLPGGDIGA LCDTVVEDVQ
0201: RLTGYDRVMV YQFHDDDHGE VVSEIRRSDL EPYLGLHYPA TDIPQAARFL FKQNRVRMIC DCNATPVKVV QSDELKRSLC LVNSTLRAPH SCHTQYMANM
0301: GSIASLVLAI VTKTKNSSKL WGLVVGHHCS PRYVPFPLRY ACEFLMQAFG LQLQMELQLA SQLAEKKAMK TQTLLCDMLL RDTVSAIVTQ SPGIMDLVKC
0401: DGAALYYKGR CWLVGVTPSE SQVKELVDWL VENHGDESTG LTTDSLVDAG YPGAVSLGDK VCGVAAAGIS LKDYLIWFRS NTASAIKWGG AKHHPKDKDD
0501: AGRMHPRSSF KAFLEVAKSR SLPWEVSEID AIHSLRVIMR ESFTISRPVV LSSGGNNGVV GRDASELTSF VCEMVRVIET ATAPIFGVDS NGCVNGWNNK
0601: TAEMTGLGAG EAMGKSLADE IVQEESRGAL ESVLSKALRG EEKKNVMLKL RKFGNKDSSS SDVCVLVNSC TSRDYTEKIV GVCFVGQDMT SEKAITDRFI
0701: RLQGDYKTIV QSLNPLIPPI FASDENARCS EWNAAMEKLT GWSKHEVIGR MLPGEVFGDL CKVKCQDALT KFLISLYQGI AGGGNVPESS VVGFFSKEGK
0801: YIEASLTANK STNSGGKVIG CFFFLQIINK ESSSSSPEVK ESAQSLNELA YIRQEIKNPL NGIRFAHKLL ESSEISENQR QFLETSDACE KQIATIIEDT
0901: DLKSIEEGKL QMETEEFRLE SVLDTIISQV MIMLRERKSQ LRVEVSQEIK TLPLYGDRVK LQLILADLLR NIVNHAPFPD SWVGIKISPG HKLAHDNNPY
1001: IHLQFRMIHP GKGLPSEMLS DMFETREGWV TPDGLGLKLS RKLLEQMNGR VSYVREDERC FFQVDLQVKT RLGVETGSSI
0101: SSGVSLAKAA SFTEISLMNP VLVHSRTTTT ASHKPFYAIL HRIDAGIVID LEPAKSSDPA LTLAGAVQSQ KLAVRAISRL QSLPGGDIGA LCDTVVEDVQ
0201: RLTGYDRVMV YQFHDDDHGE VVSEIRRSDL EPYLGLHYPA TDIPQAARFL FKQNRVRMIC DCNATPVKVV QSDELKRSLC LVNSTLRAPH SCHTQYMANM
0301: GSIASLVLAI VTKTKNSSKL WGLVVGHHCS PRYVPFPLRY ACEFLMQAFG LQLQMELQLA SQLAEKKAMK TQTLLCDMLL RDTVSAIVTQ SPGIMDLVKC
0401: DGAALYYKGR CWLVGVTPSE SQVKELVDWL VENHGDESTG LTTDSLVDAG YPGAVSLGDK VCGVAAAGIS LKDYLIWFRS NTASAIKWGG AKHHPKDKDD
0501: AGRMHPRSSF KAFLEVAKSR SLPWEVSEID AIHSLRVIMR ESFTISRPVV LSSGGNNGVV GRDASELTSF VCEMVRVIET ATAPIFGVDS NGCVNGWNNK
0601: TAEMTGLGAG EAMGKSLADE IVQEESRGAL ESVLSKALRG EEKKNVMLKL RKFGNKDSSS SDVCVLVNSC TSRDYTEKIV GVCFVGQDMT SEKAITDRFI
0701: RLQGDYKTIV QSLNPLIPPI FASDENARCS EWNAAMEKLT GWSKHEVIGR MLPGEVFGDL CKVKCQDALT KFLISLYQGI AGGGNVPESS VVGFFSKEGK
0801: YIEASLTANK STNSGGKVIG CFFFLQIINK ESSSSSPEVK ESAQSLNELA YIRQEIKNPL NGIRFAHKLL ESSEISENQR QFLETSDACE KQIATIIEDT
0901: DLKSIEEGKL QMETEEFRLE SVLDTIISQV MIMLRERKSQ LRVEVSQEIK TLPLYGDRVK LQLILADLLR NIVNHAPFPD SWVGIKISPG HKLAHDNNPY
1001: IHLQFRMIHP GKGLPSEMLS DMFETREGWV TPDGLGLKLS RKLLEQMNGR VSYVREDERC FFQVDLQVKT RLGVETGSSI
0001: MGFESSSSAA SNMKPQPQKS NTAQYSVDAA LFADFAQSIY TGKSFNYSKS VISPPNHVPD EHITAYLSNI QRGGLVQPFG CLIAVEEPSF RILGLSDNSS
0101: DFLGLLSLPS TSHSGEFDKV KGLIGIDART LFTPSSGASL SKAASFTEIS LLNPVLVHSR TTQKPFYAIL HRIDAGIVMD LEPAKSGDPA LTLAGAVQSQ
0201: KLAVRAISRL QSLPGGDIGA LCDTVVEDVQ RLTGYDRVMV YQFHEDDHGE VVSEIRRSDL EPYLGLHYPA TDIPQAARFL FKQNRVRMIC DCNATPVKVV
0301: QSEELKRPLC LVNSTLRAPH GCHTQYMANM GSVASLALAI VVKGKDSSKL WGLVVGHHCS PRYVPFPLRY ACEFLMQAFG LQLQMELQLA SQLAEKKAMR
0401: TQTLLCDMLL RDTVSAIVTQ SPGIMDLVKC DGAALYYKGK CWLVGVTPNE SQVKDLVNWL VENHGDDSTG LTTDSLVDAG YPGAISLGDA VCGVAAAGFS
0501: SKDYLLWFRS NTASAIKWGG AKHHPKDKDD AGRMHPRSSF TAFLEVAKSR SLPWEISEID AIHSLRLIMR ESFTSSRPVL SGNGVARDAN ELTSFVCEMV
0601: RVIETATAPI FGVDSSGCIN GWNKKTAEMT GLLASEAMGK SLADEIVQEE SRAALESLLC KALQGEEEKS VMLKLRKFGQ NNHPDYSSDV CVLVNSCTSR
0701: DYTENIIGVC FVGQDITSEK AITDRFIRLQ GDYKTIVQSL NPLIPPIFAS DENACCSEWN AAMEKLTGWS KHEVIGKMLP GEVFGVFCKV KCQDSLTKFL
0801: ISLYQGIAGD NVPESSLVEF FNKEGKYIEA SLTANKSTNI EGKVIRCFFF LQIINKESGL SCPELKESAQ SLNELTYVRQ EIKNPLNGIR FAHKLLESSE
0901: ISASQRQFLE TSDACEKQIT TIIESTDLKS IEEGKLQLET EEFRLENILD TIISQVMIIL RERNSQLRVE VAEEIKTLPL NGDRVKLQLI LADLLRNIVN
1001: HAPFPNSWVG ISISPGQELS RDNGRYIHLQ FRMIHPGKGL PSEMLSDMFE TRDGWVTPDG LGLKLSRKLL EQMNGRVSYV REDERCFFQV DLQVKTMLGV
1101: ESRGTEGSSS IK
0101: DFLGLLSLPS TSHSGEFDKV KGLIGIDART LFTPSSGASL SKAASFTEIS LLNPVLVHSR TTQKPFYAIL HRIDAGIVMD LEPAKSGDPA LTLAGAVQSQ
0201: KLAVRAISRL QSLPGGDIGA LCDTVVEDVQ RLTGYDRVMV YQFHEDDHGE VVSEIRRSDL EPYLGLHYPA TDIPQAARFL FKQNRVRMIC DCNATPVKVV
0301: QSEELKRPLC LVNSTLRAPH GCHTQYMANM GSVASLALAI VVKGKDSSKL WGLVVGHHCS PRYVPFPLRY ACEFLMQAFG LQLQMELQLA SQLAEKKAMR
0401: TQTLLCDMLL RDTVSAIVTQ SPGIMDLVKC DGAALYYKGK CWLVGVTPNE SQVKDLVNWL VENHGDDSTG LTTDSLVDAG YPGAISLGDA VCGVAAAGFS
0501: SKDYLLWFRS NTASAIKWGG AKHHPKDKDD AGRMHPRSSF TAFLEVAKSR SLPWEISEID AIHSLRLIMR ESFTSSRPVL SGNGVARDAN ELTSFVCEMV
0601: RVIETATAPI FGVDSSGCIN GWNKKTAEMT GLLASEAMGK SLADEIVQEE SRAALESLLC KALQGEEEKS VMLKLRKFGQ NNHPDYSSDV CVLVNSCTSR
0701: DYTENIIGVC FVGQDITSEK AITDRFIRLQ GDYKTIVQSL NPLIPPIFAS DENACCSEWN AAMEKLTGWS KHEVIGKMLP GEVFGVFCKV KCQDSLTKFL
0801: ISLYQGIAGD NVPESSLVEF FNKEGKYIEA SLTANKSTNI EGKVIRCFFF LQIINKESGL SCPELKESAQ SLNELTYVRQ EIKNPLNGIR FAHKLLESSE
0901: ISASQRQFLE TSDACEKQIT TIIESTDLKS IEEGKLQLET EEFRLENILD TIISQVMIIL RERNSQLRVE VAEEIKTLPL NGDRVKLQLI LADLLRNIVN
1001: HAPFPNSWVG ISISPGQELS RDNGRYIHLQ FRMIHPGKGL PSEMLSDMFE TRDGWVTPDG LGLKLSRKLL EQMNGRVSYV REDERCFFQV DLQVKTMLGV
1101: ESRGTEGSSS IK
Arabidopsis Description
PHYEPhytochrome E [Source:UniProtKB/Swiss-Prot;Acc:P42498]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.