Subcellular Localization
min:
: max
Winner_takes_all: vacuole, endoplasmic reticulum, plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- endoplasmic reticulum 3
- extracellular 2
- golgi 2
- plasma membrane 2
- vacuole 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G09570.3 | Thale cress | cytosol | 91.99 | 94.85 |
| CDY22632 | Canola | cytosol, plastid | 90.01 | 93.05 |
| CDX93501 | Canola | cytosol | 96.21 | 92.93 |
| CDY06362 | Canola | cytosol, plastid | 89.66 | 92.86 |
| VIT_14s0060g00100.t01 | Wine grape | nucleus | 78.81 | 81.41 |
| Solyc10g044670.1.1 | Tomato | extracellular | 76.57 | 79.16 |
| PGSC0003DMT400040772 | Potato | cytosol | 76.31 | 78.9 |
| KRG90417 | Soybean | nucleus | 75.88 | 78.45 |
| KRG96653 | Soybean | nucleus | 71.92 | 73.89 |
| KRH33709 | Soybean | endoplasmic reticulum, golgi, plastid | 75.71 | 73.8 |
| GSMUA_Achr8P06130_001 | Banana | cytosol, mitochondrion | 63.39 | 68.47 |
| HORVU0Hr1G023250.4 | Barley | cytosol | 20.07 | 66.95 |
| HORVU1Hr1G068750.7 | Barley | cytosol | 20.24 | 66.2 |
| TraesCS4B01G052000.1 | Wheat | mitochondrion | 50.22 | 65.88 |
| GSMUA_Achr5P27310_001 | Banana | cytosol | 8.79 | 65.81 |
| KRH68382 | Soybean | endoplasmic reticulum, plastid, vacuole | 54.78 | 65.3 |
| OQU91090 | Sorghum | nucleus | 61.67 | 63.31 |
| Os03t0719800-01 | Rice | plastid | 61.33 | 63.12 |
| Zm00001d013402_P005 | Maize | nucleus | 61.33 | 62.95 |
| Zm00001d033799_P001 | Maize | cytosol | 61.33 | 62.95 |
| HORVU4Hr1G008610.2 | Barley | mitochondrion | 60.29 | 61.95 |
| TraesCS4A01G262900.1 | Wheat | mitochondrion | 59.78 | 61.42 |
| TraesCS4D01G052200.1 | Wheat | plastid | 59.86 | 61.29 |
| Zm00001d008542_P001 | Maize | cytosol | 12.75 | 61.16 |
| OQU91089 | Sorghum | cytosol | 8.7 | 56.42 |
| CDY38546 | Canola | cytosol, plastid | 49.61 | 51.57 |
| CDY06455 | Canola | cytosol, mitochondrion, nucleus, plastid | 49.61 | 51.52 |
| CDX92112 | Canola | cytosol | 49.78 | 50.97 |
| CDX75900 | Canola | cytosol | 49.44 | 49.7 |
| CDX95888 | Canola | cytosol | 49.35 | 49.06 |
| CDX78827 | Canola | cytosol | 43.76 | 47.04 |
| CDY61670 | Canola | cytosol | 44.88 | 46.68 |
| CDX82382 | Canola | cytosol | 5.51 | 34.78 |
| CDY42549 | Canola | cytosol | 5.68 | 29.2 |
Protein Annotations
Description
BnaCnng19880DPhytochrome [Source:UniProtKB/TrEMBL;Acc:A0A078ILM0]
Coordinates
chrLK032946:+:44365..49054
Molecular Weight (calculated)
128669.0 Da
IEP (calculated)
6.511
GRAVY (calculated)
-0.131
Length
1161 amino acids
Sequence
(BLAST)
(BLAST)
0001: MVINFVGLVL LAVTVYKKKH HLINRFLLEH SFPKGENMSG SRPSHSSEGS RRSRHSARIV AQTTVDAKLH ADFEESGSSF DYSTSVRVTG PVVENQPPRS
0101: DKVTTTYLHH IQKGKLIQPF GCLLALDEKT FKVIAYSENA AELLTMASHA VPSVGEQGAL GIGTDIRSLF TAPSASALQK ALGFGDVSLL NPILVHCKTS
0201: AKPFYAIVHR VTGSIIVDFE PVKPYEVPMT AAGALQSYKL AAKAITRLQS LPSGSMERLC DTVVQEVFEL TGYDRVMAYK FHDDDHGEVV SEVTKPGLEP
0301: YLGLHYPATD IPQAARFLFM KNKVRMIVDC NAKHVRVLQD EKLSSDLTLC GSTLRAPHSC HLQYMANMDS IASLVMAVVV NEEDGGEGDA TAPDSTPPQK
0401: RKRLWGLVVC HNTTPRFVPF PLRYACEFLA QVFAIHVNKE VELENQIVEK NILRTQTLLC DMLMRDAPLG IVSQSPNIMD LVKCDGAALL YKDKVWKLGI
0501: TPSEFHLQEI ASWLCEYHTD STGLSTDSLH DAGFPRALAL GDSVCGMAAV RISSKDMIFW FRSHTAGEVR WGGAKHDPDD RDDARRMHPR SSFKAFLEVV
0601: KTRSLPWKDY EMDAIHSLQL ILRNAFKDGE TTDVNTKIIH SKLNDLKIDG IQELEAVTSE MVRLIETATV PILAVDSDGL VNGWNTKITE LTGLPVDEAI
0701: GKHLLTHVED SSVEIVKRML ENALEGTEEQ NVQFEIKTHL SRADAGPISL VVNACASRDL HENVVGVCFV AHDLTGQKTV MDKFTRIEGD YKAIIQNPNP
0801: LIPPIFGTDE FGWCTEWNPA MSKLTGLKRE EVMDKMLLGE VFGTQKSCCR LKNQEAFVNL GIVLNNAVTS QEAEKVPFAF FTRGGKYVEC LLCVSKKLDR
0901: EGVVTGVFCF LQLASHELQQ ALHVQRLAER TALKRLKALA YIKRQIRNPL SGIMFTRKMM EGSELGPEQR RILQTSALCQ KQLSKILDDS DLESIIEGCL
1001: DLEMKEFSLN EVLTASTSQV MMKSNGKSVR ITNDTGEEVM SDTLYGDSIR LQQVLADFIL MSVNFTPSGG ELTVTASLRK DQLGRSVHLA YLEIRITHTG
1101: AGLPEFLLNQ MFGTEEDTSE EGLSLMVSRK LVKLMNGDVQ YLRQAGKSSF IITAELAAAN K
0101: DKVTTTYLHH IQKGKLIQPF GCLLALDEKT FKVIAYSENA AELLTMASHA VPSVGEQGAL GIGTDIRSLF TAPSASALQK ALGFGDVSLL NPILVHCKTS
0201: AKPFYAIVHR VTGSIIVDFE PVKPYEVPMT AAGALQSYKL AAKAITRLQS LPSGSMERLC DTVVQEVFEL TGYDRVMAYK FHDDDHGEVV SEVTKPGLEP
0301: YLGLHYPATD IPQAARFLFM KNKVRMIVDC NAKHVRVLQD EKLSSDLTLC GSTLRAPHSC HLQYMANMDS IASLVMAVVV NEEDGGEGDA TAPDSTPPQK
0401: RKRLWGLVVC HNTTPRFVPF PLRYACEFLA QVFAIHVNKE VELENQIVEK NILRTQTLLC DMLMRDAPLG IVSQSPNIMD LVKCDGAALL YKDKVWKLGI
0501: TPSEFHLQEI ASWLCEYHTD STGLSTDSLH DAGFPRALAL GDSVCGMAAV RISSKDMIFW FRSHTAGEVR WGGAKHDPDD RDDARRMHPR SSFKAFLEVV
0601: KTRSLPWKDY EMDAIHSLQL ILRNAFKDGE TTDVNTKIIH SKLNDLKIDG IQELEAVTSE MVRLIETATV PILAVDSDGL VNGWNTKITE LTGLPVDEAI
0701: GKHLLTHVED SSVEIVKRML ENALEGTEEQ NVQFEIKTHL SRADAGPISL VVNACASRDL HENVVGVCFV AHDLTGQKTV MDKFTRIEGD YKAIIQNPNP
0801: LIPPIFGTDE FGWCTEWNPA MSKLTGLKRE EVMDKMLLGE VFGTQKSCCR LKNQEAFVNL GIVLNNAVTS QEAEKVPFAF FTRGGKYVEC LLCVSKKLDR
0901: EGVVTGVFCF LQLASHELQQ ALHVQRLAER TALKRLKALA YIKRQIRNPL SGIMFTRKMM EGSELGPEQR RILQTSALCQ KQLSKILDDS DLESIIEGCL
1001: DLEMKEFSLN EVLTASTSQV MMKSNGKSVR ITNDTGEEVM SDTLYGDSIR LQQVLADFIL MSVNFTPSGG ELTVTASLRK DQLGRSVHLA YLEIRITHTG
1101: AGLPEFLLNQ MFGTEEDTSE EGLSLMVSRK LVKLMNGDVQ YLRQAGKSSF IITAELAAAN K
0001: MEKKMSGSRP TQSSEGSRRS RHSARIIAQT TVDAKLHADF EESGSSFDYS TSVRVTGPVV ENQPPRSDKV TTTYLHHIQK GKLIQPFGCL LALDEKTFKV
0101: IAYSENASEL LTMASHAVPS VGEHPVLGIG TDIRSLFTAP SASALQKALG FGDVSLLNPI LVHCRTSAKP FYAIIHRVTG SIIIDFEPVK PYEVPMTAAG
0201: ALQSYKLAAK AITRLQSLPS GSMERLCDTM VQEVFELTGY DRVMAYKFHE DDHGEVVSEV TKPGLEPYLG LHYPATDIPQ AARFLFMKNK VRMIVDCNAK
0301: HARVLQDEKL SFDLTLCGST LRAPHSCHLQ YMANMDSIAS LVMAVVVNEE DGEGDAPDAT TQPQKRKRLW GLVVCHNTTP RFVPFPLRYA CEFLAQVFAI
0401: HVNKEVELDN QMVEKNILRT QTLLCDMLMR DAPLGIVSQS PNIMDLVKCD GAALLYKDKI WKLGTTPSEF HLQEIASWLC EYHMDSTGLS TDSLHDAGFP
0501: RALSLGDSVC GMAAVRISSK DMIFWFRSHT AGEVRWGGAK HDPDDRDDAR RMHPRSSFKA FLEVVKTRSL PWKDYEMDAI HSLQLILRNA FKDSETTDVN
0601: TKVIYSKLND LKIDGIQELE AVTSEMVRLI ETATVPILAV DSDGLVNGWN TKIAELTGLS VDEAIGKHFL TLVEDSSVEI VKRMLENALE GTEEQNVQFE
0701: IKTHLSRADA GPISLVVNAC ASRDLHENVV GVCFVAHDLT GQKTVMDKFT RIEGDYKAII QNPNPLIPPI FGTDEFGWCT EWNPAMSKLT GLKREEVIDK
0801: MLLGEVFGTQ KSCCRLKNQE AFVNLGIVLN NAVTSQDPEK VSFAFFTRGG KYVECLLCVS KKLDREGVVT GVFCFLQLAS HELQQALHVQ RLAERTAVKR
0901: LKALAYIKRQ IRNPLSGIMF TRKMIEGTEL GPEQRRILQT SALCQKQLSK ILDDSDLESI IEGCLDLEMK EFTLNEVLTA STSQVMMKSN GKSVRITNET
1001: GEEVMSDTLY GDSIRLQQVL ADFMLMAVNF TPSGGQLTVS ASLRKDQLGR SVHLANLEIR LTHTGAGIPE FLLNQMFGTE EDVSEEGLSL MVSRKLVKLM
1101: NGDVQYLRQA GKSSFIITAE LAAANK
0101: IAYSENASEL LTMASHAVPS VGEHPVLGIG TDIRSLFTAP SASALQKALG FGDVSLLNPI LVHCRTSAKP FYAIIHRVTG SIIIDFEPVK PYEVPMTAAG
0201: ALQSYKLAAK AITRLQSLPS GSMERLCDTM VQEVFELTGY DRVMAYKFHE DDHGEVVSEV TKPGLEPYLG LHYPATDIPQ AARFLFMKNK VRMIVDCNAK
0301: HARVLQDEKL SFDLTLCGST LRAPHSCHLQ YMANMDSIAS LVMAVVVNEE DGEGDAPDAT TQPQKRKRLW GLVVCHNTTP RFVPFPLRYA CEFLAQVFAI
0401: HVNKEVELDN QMVEKNILRT QTLLCDMLMR DAPLGIVSQS PNIMDLVKCD GAALLYKDKI WKLGTTPSEF HLQEIASWLC EYHMDSTGLS TDSLHDAGFP
0501: RALSLGDSVC GMAAVRISSK DMIFWFRSHT AGEVRWGGAK HDPDDRDDAR RMHPRSSFKA FLEVVKTRSL PWKDYEMDAI HSLQLILRNA FKDSETTDVN
0601: TKVIYSKLND LKIDGIQELE AVTSEMVRLI ETATVPILAV DSDGLVNGWN TKIAELTGLS VDEAIGKHFL TLVEDSSVEI VKRMLENALE GTEEQNVQFE
0701: IKTHLSRADA GPISLVVNAC ASRDLHENVV GVCFVAHDLT GQKTVMDKFT RIEGDYKAII QNPNPLIPPI FGTDEFGWCT EWNPAMSKLT GLKREEVIDK
0801: MLLGEVFGTQ KSCCRLKNQE AFVNLGIVLN NAVTSQDPEK VSFAFFTRGG KYVECLLCVS KKLDREGVVT GVFCFLQLAS HELQQALHVQ RLAERTAVKR
0901: LKALAYIKRQ IRNPLSGIMF TRKMIEGTEL GPEQRRILQT SALCQKQLSK ILDDSDLESI IEGCLDLEMK EFTLNEVLTA STSQVMMKSN GKSVRITNET
1001: GEEVMSDTLY GDSIRLQQVL ADFMLMAVNF TPSGGQLTVS ASLRKDQLGR SVHLANLEIR LTHTGAGIPE FLLNQMFGTE EDVSEEGLSL MVSRKLVKLM
1101: NGDVQYLRQA GKSSFIITAE LAAANK
Arabidopsis Description
PHYAphytochrome A [Source:TAIR;Acc:AT1G09570]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.